Experiment: Nalidixic 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS14750 and ABZR86_RS14755 are separated by 43 nucleotides ABZR86_RS14755 and ABZR86_RS14760 are separated by 207 nucleotides ABZR86_RS14760 and ABZR86_RS14765 are separated by 66 nucleotides
ABZR86_RS14750: ABZR86_RS14750 - MATE family efflux transporter, at 3,315,890 to 3,317,317
_RS14750
ABZR86_RS14755: ABZR86_RS14755 - DUF2239 family protein, at 3,317,361 to 3,317,951
_RS14755
ABZR86_RS14760: ABZR86_RS14760 - hypothetical protein, at 3,318,159 to 3,318,686
_RS14760
ABZR86_RS14765: ABZR86_RS14765 - DHA2 family efflux MFS transporter permease subunit, at 3,318,753 to 3,320,282
_RS14765
Position (kb) 3318
3319 Strain fitness (log2 ratio) -2
-1
0
1 at 3317.351 kb on + strand at 3317.479 kb on + strand, within ABZR86_RS14755 at 3317.500 kb on + strand, within ABZR86_RS14755 at 3317.500 kb on + strand, within ABZR86_RS14755 at 3317.501 kb on - strand, within ABZR86_RS14755 at 3317.501 kb on - strand, within ABZR86_RS14755 at 3317.501 kb on - strand, within ABZR86_RS14755 at 3317.955 kb on + strand at 3317.955 kb on + strand at 3317.955 kb on + strand at 3317.955 kb on + strand at 3317.955 kb on + strand at 3317.955 kb on + strand at 3317.955 kb on + strand at 3317.955 kb on + strand at 3317.955 kb on + strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3317.956 kb on - strand at 3318.082 kb on + strand at 3318.082 kb on + strand at 3318.082 kb on + strand at 3318.082 kb on + strand at 3318.083 kb on - strand at 3318.083 kb on - strand at 3318.110 kb on + strand at 3318.110 kb on + strand at 3318.111 kb on - strand at 3318.111 kb on - strand at 3318.111 kb on - strand at 3318.111 kb on - strand at 3318.121 kb on - strand at 3318.121 kb on - strand at 3318.121 kb on - strand at 3318.122 kb on + strand at 3318.122 kb on + strand at 3318.122 kb on + strand at 3318.129 kb on + strand at 3318.129 kb on + strand at 3318.130 kb on - strand at 3318.170 kb on + strand at 3318.171 kb on - strand at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.264 kb on + strand, within ABZR86_RS14760 at 3318.265 kb on - strand, within ABZR86_RS14760 at 3318.265 kb on - strand, within ABZR86_RS14760 at 3318.265 kb on - strand, within ABZR86_RS14760 at 3318.265 kb on - strand, within ABZR86_RS14760 at 3318.265 kb on - strand, within ABZR86_RS14760 at 3318.265 kb on - strand, within ABZR86_RS14760 at 3318.265 kb on - strand, within ABZR86_RS14760 at 3318.265 kb on - strand, within ABZR86_RS14760 at 3318.341 kb on + strand, within ABZR86_RS14760 at 3318.341 kb on + strand, within ABZR86_RS14760 at 3318.341 kb on + strand, within ABZR86_RS14760 at 3318.342 kb on - strand, within ABZR86_RS14760 at 3318.411 kb on + strand, within ABZR86_RS14760 at 3318.412 kb on - strand, within ABZR86_RS14760 at 3318.462 kb on + strand, within ABZR86_RS14760 at 3318.463 kb on - strand, within ABZR86_RS14760 at 3318.483 kb on + strand, within ABZR86_RS14760 at 3318.484 kb on - strand, within ABZR86_RS14760 at 3318.484 kb on - strand, within ABZR86_RS14760 at 3318.498 kb on + strand, within ABZR86_RS14760 at 3318.498 kb on + strand, within ABZR86_RS14760 at 3318.498 kb on + strand, within ABZR86_RS14760 at 3318.498 kb on + strand, within ABZR86_RS14760 at 3318.499 kb on - strand, within ABZR86_RS14760 at 3318.499 kb on - strand, within ABZR86_RS14760 at 3318.499 kb on - strand, within ABZR86_RS14760 at 3318.499 kb on - strand, within ABZR86_RS14760 at 3318.499 kb on - strand, within ABZR86_RS14760 at 3318.566 kb on + strand, within ABZR86_RS14760 at 3318.566 kb on + strand, within ABZR86_RS14760 at 3318.567 kb on - strand, within ABZR86_RS14760 at 3318.567 kb on - strand, within ABZR86_RS14760 at 3318.567 kb on - strand, within ABZR86_RS14760 at 3318.567 kb on - strand, within ABZR86_RS14760 at 3318.588 kb on + strand, within ABZR86_RS14760 at 3318.588 kb on + strand, within ABZR86_RS14760 at 3318.588 kb on + strand, within ABZR86_RS14760 at 3318.589 kb on - strand, within ABZR86_RS14760 at 3318.589 kb on - strand, within ABZR86_RS14760 at 3318.589 kb on - strand, within ABZR86_RS14760 at 3318.589 kb on - strand, within ABZR86_RS14760 at 3318.589 kb on - strand, within ABZR86_RS14760 at 3318.589 kb on - strand, within ABZR86_RS14760 at 3318.589 kb on - strand, within ABZR86_RS14760 at 3318.611 kb on + strand, within ABZR86_RS14760 at 3318.611 kb on + strand, within ABZR86_RS14760 at 3318.611 kb on - strand, within ABZR86_RS14760 at 3318.612 kb on - strand, within ABZR86_RS14760 at 3318.612 kb on - strand, within ABZR86_RS14760 at 3318.612 kb on - strand, within ABZR86_RS14760 at 3318.612 kb on - strand, within ABZR86_RS14760 at 3318.612 kb on - strand, within ABZR86_RS14760 at 3318.685 kb on - strand at 3318.685 kb on - strand at 3318.685 kb on - strand at 3318.685 kb on - strand at 3318.685 kb on - strand at 3318.951 kb on + strand, within ABZR86_RS14765 at 3318.951 kb on + strand, within ABZR86_RS14765 at 3318.976 kb on + strand, within ABZR86_RS14765 at 3318.976 kb on + strand, within ABZR86_RS14765 at 3318.977 kb on - strand, within ABZR86_RS14765 at 3319.309 kb on + strand, within ABZR86_RS14765 at 3319.309 kb on + strand, within ABZR86_RS14765 at 3319.309 kb on + strand, within ABZR86_RS14765 at 3319.309 kb on + strand, within ABZR86_RS14765 at 3319.309 kb on + strand, within ABZR86_RS14765 at 3319.309 kb on + strand, within ABZR86_RS14765 at 3319.309 kb on + strand, within ABZR86_RS14765 at 3319.309 kb on + strand, within ABZR86_RS14765 at 3319.310 kb on - strand, within ABZR86_RS14765 at 3319.310 kb on - strand, within ABZR86_RS14765 at 3319.310 kb on - strand, within ABZR86_RS14765 at 3319.310 kb on - strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.385 kb on + strand, within ABZR86_RS14765 at 3319.386 kb on - strand, within ABZR86_RS14765 at 3319.386 kb on - strand, within ABZR86_RS14765 at 3319.387 kb on + strand, within ABZR86_RS14765 at 3319.388 kb on - strand, within ABZR86_RS14765 at 3319.388 kb on - strand, within ABZR86_RS14765 at 3319.388 kb on - strand, within ABZR86_RS14765 at 3319.388 kb on - strand, within ABZR86_RS14765 at 3319.388 kb on - strand, within ABZR86_RS14765 at 3319.388 kb on - strand, within ABZR86_RS14765 at 3319.388 kb on - strand, within ABZR86_RS14765 at 3319.448 kb on - strand, within ABZR86_RS14765 at 3319.448 kb on - strand, within ABZR86_RS14765 at 3319.448 kb on - strand, within ABZR86_RS14765 at 3319.448 kb on - strand, within ABZR86_RS14765 at 3319.448 kb on - strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.681 kb on + strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765 at 3319.682 kb on - strand, within ABZR86_RS14765
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.04 mg/ml remove 3,317,351 + +0.2 3,317,479 + ABZR86_RS14755 0.20 -0.7 3,317,500 + ABZR86_RS14755 0.24 -0.8 3,317,500 + ABZR86_RS14755 0.24 -1.1 3,317,501 - ABZR86_RS14755 0.24 -0.6 3,317,501 - ABZR86_RS14755 0.24 -1.7 3,317,501 - ABZR86_RS14755 0.24 -0.7 3,317,955 + +0.1 3,317,955 + +0.1 3,317,955 + -0.4 3,317,955 + -0.7 3,317,955 + -0.2 3,317,955 + -1.2 3,317,955 + -0.4 3,317,955 + -0.4 3,317,955 + -0.2 3,317,956 - -0.6 3,317,956 - -1.1 3,317,956 - -0.4 3,317,956 - -0.6 3,317,956 - -0.4 3,317,956 - -0.2 3,317,956 - -0.1 3,317,956 - -1.0 3,317,956 - -0.1 3,317,956 - -0.7 3,317,956 - -0.4 3,317,956 - -0.2 3,317,956 - -0.1 3,317,956 - -2.0 3,317,956 - +0.2 3,317,956 - -1.1 3,318,082 + +0.4 3,318,082 + +0.2 3,318,082 + +0.1 3,318,082 + -0.7 3,318,083 - +0.1 3,318,083 - +0.0 3,318,110 + +0.1 3,318,110 + +0.1 3,318,111 - +0.3 3,318,111 - +0.4 3,318,111 - -0.3 3,318,111 - +0.1 3,318,121 - +0.2 3,318,121 - +0.5 3,318,121 - +0.6 3,318,122 + +0.3 3,318,122 + +0.5 3,318,122 + +0.9 3,318,129 + -0.3 3,318,129 + +0.5 3,318,130 - -0.2 3,318,170 + -0.2 3,318,171 - -0.2 3,318,264 + ABZR86_RS14760 0.20 -0.7 3,318,264 + ABZR86_RS14760 0.20 -0.4 3,318,264 + ABZR86_RS14760 0.20 -1.7 3,318,264 + ABZR86_RS14760 0.20 -0.1 3,318,264 + ABZR86_RS14760 0.20 -0.7 3,318,264 + ABZR86_RS14760 0.20 -0.3 3,318,264 + ABZR86_RS14760 0.20 -0.5 3,318,264 + ABZR86_RS14760 0.20 -0.5 3,318,264 + ABZR86_RS14760 0.20 +0.3 3,318,264 + ABZR86_RS14760 0.20 -0.5 3,318,265 - ABZR86_RS14760 0.20 -0.2 3,318,265 - ABZR86_RS14760 0.20 +0.0 3,318,265 - ABZR86_RS14760 0.20 +0.9 3,318,265 - ABZR86_RS14760 0.20 +0.4 3,318,265 - ABZR86_RS14760 0.20 +0.7 3,318,265 - ABZR86_RS14760 0.20 +0.1 3,318,265 - ABZR86_RS14760 0.20 -0.4 3,318,265 - ABZR86_RS14760 0.20 -0.2 3,318,341 + ABZR86_RS14760 0.34 -0.7 3,318,341 + ABZR86_RS14760 0.34 -1.1 3,318,341 + ABZR86_RS14760 0.34 -0.1 3,318,342 - ABZR86_RS14760 0.35 -0.7 3,318,411 + ABZR86_RS14760 0.48 -1.5 3,318,412 - ABZR86_RS14760 0.48 -0.0 3,318,462 + ABZR86_RS14760 0.57 -1.7 3,318,463 - ABZR86_RS14760 0.58 +0.6 3,318,483 + ABZR86_RS14760 0.61 -0.7 3,318,484 - ABZR86_RS14760 0.62 -0.0 3,318,484 - ABZR86_RS14760 0.62 -0.0 3,318,498 + ABZR86_RS14760 0.64 -0.8 3,318,498 + ABZR86_RS14760 0.64 -1.4 3,318,498 + ABZR86_RS14760 0.64 -1.3 3,318,498 + ABZR86_RS14760 0.64 -1.6 3,318,499 - ABZR86_RS14760 0.64 -0.4 3,318,499 - ABZR86_RS14760 0.64 +0.2 3,318,499 - ABZR86_RS14760 0.64 -1.8 3,318,499 - ABZR86_RS14760 0.64 +0.2 3,318,499 - ABZR86_RS14760 0.64 +0.2 3,318,566 + ABZR86_RS14760 0.77 -1.6 3,318,566 + ABZR86_RS14760 0.77 -1.0 3,318,567 - ABZR86_RS14760 0.77 +0.1 3,318,567 - ABZR86_RS14760 0.77 +0.1 3,318,567 - ABZR86_RS14760 0.77 -0.0 3,318,567 - ABZR86_RS14760 0.77 -0.8 3,318,588 + ABZR86_RS14760 0.81 -0.9 3,318,588 + ABZR86_RS14760 0.81 -1.3 3,318,588 + ABZR86_RS14760 0.81 -0.6 3,318,589 - ABZR86_RS14760 0.81 +0.1 3,318,589 - ABZR86_RS14760 0.81 +0.9 3,318,589 - ABZR86_RS14760 0.81 +0.9 3,318,589 - ABZR86_RS14760 0.81 -0.0 3,318,589 - ABZR86_RS14760 0.81 -0.3 3,318,589 - ABZR86_RS14760 0.81 +0.4 3,318,589 - ABZR86_RS14760 0.81 -0.3 3,318,611 + ABZR86_RS14760 0.86 -0.9 3,318,611 + ABZR86_RS14760 0.86 -1.6 3,318,611 - ABZR86_RS14760 0.86 -0.5 3,318,612 - ABZR86_RS14760 0.86 -0.1 3,318,612 - ABZR86_RS14760 0.86 +0.6 3,318,612 - ABZR86_RS14760 0.86 +0.6 3,318,612 - ABZR86_RS14760 0.86 -1.0 3,318,612 - ABZR86_RS14760 0.86 -0.6 3,318,685 - -1.2 3,318,685 - +0.1 3,318,685 - +0.3 3,318,685 - +0.3 3,318,685 - +0.2 3,318,951 + ABZR86_RS14765 0.13 -0.7 3,318,951 + ABZR86_RS14765 0.13 -0.0 3,318,976 + ABZR86_RS14765 0.15 -0.3 3,318,976 + ABZR86_RS14765 0.15 -0.3 3,318,977 - ABZR86_RS14765 0.15 -0.2 3,319,309 + ABZR86_RS14765 0.36 -0.1 3,319,309 + ABZR86_RS14765 0.36 -0.8 3,319,309 + ABZR86_RS14765 0.36 -0.8 3,319,309 + ABZR86_RS14765 0.36 +0.2 3,319,309 + ABZR86_RS14765 0.36 +0.2 3,319,309 + ABZR86_RS14765 0.36 -0.2 3,319,309 + ABZR86_RS14765 0.36 -0.2 3,319,309 + ABZR86_RS14765 0.36 +0.6 3,319,310 - ABZR86_RS14765 0.36 +0.1 3,319,310 - ABZR86_RS14765 0.36 -0.2 3,319,310 - ABZR86_RS14765 0.36 -0.9 3,319,310 - ABZR86_RS14765 0.36 -0.2 3,319,385 + ABZR86_RS14765 0.41 -0.2 3,319,385 + ABZR86_RS14765 0.41 -0.4 3,319,385 + ABZR86_RS14765 0.41 -2.2 3,319,385 + ABZR86_RS14765 0.41 -0.1 3,319,385 + ABZR86_RS14765 0.41 -0.4 3,319,385 + ABZR86_RS14765 0.41 +0.4 3,319,385 + ABZR86_RS14765 0.41 +0.5 3,319,385 + ABZR86_RS14765 0.41 -0.6 3,319,385 + ABZR86_RS14765 0.41 -0.4 3,319,385 + ABZR86_RS14765 0.41 -0.3 3,319,385 + ABZR86_RS14765 0.41 -0.1 3,319,385 + ABZR86_RS14765 0.41 -0.4 3,319,385 + ABZR86_RS14765 0.41 -0.3 3,319,385 + ABZR86_RS14765 0.41 -0.4 3,319,385 + ABZR86_RS14765 0.41 -0.1 3,319,386 - ABZR86_RS14765 0.41 -0.9 3,319,386 - ABZR86_RS14765 0.41 -0.9 3,319,387 + ABZR86_RS14765 0.41 -0.5 3,319,388 - ABZR86_RS14765 0.42 -0.1 3,319,388 - ABZR86_RS14765 0.42 -0.7 3,319,388 - ABZR86_RS14765 0.42 -0.7 3,319,388 - ABZR86_RS14765 0.42 +0.1 3,319,388 - ABZR86_RS14765 0.42 +0.0 3,319,388 - ABZR86_RS14765 0.42 -0.2 3,319,388 - ABZR86_RS14765 0.42 -0.4 3,319,448 - ABZR86_RS14765 0.45 -1.1 3,319,448 - ABZR86_RS14765 0.45 -1.5 3,319,448 - ABZR86_RS14765 0.45 -0.7 3,319,448 - ABZR86_RS14765 0.45 -0.1 3,319,448 - ABZR86_RS14765 0.45 -0.1 3,319,681 + ABZR86_RS14765 0.61 +0.3 3,319,681 + ABZR86_RS14765 0.61 -1.0 3,319,681 + ABZR86_RS14765 0.61 -0.6 3,319,681 + ABZR86_RS14765 0.61 -1.0 3,319,681 + ABZR86_RS14765 0.61 +0.2 3,319,681 + ABZR86_RS14765 0.61 -2.3 3,319,681 + ABZR86_RS14765 0.61 +0.9 3,319,681 + ABZR86_RS14765 0.61 -0.6 3,319,681 + ABZR86_RS14765 0.61 -0.6 3,319,681 + ABZR86_RS14765 0.61 -0.8 3,319,681 + ABZR86_RS14765 0.61 -1.1 3,319,681 + ABZR86_RS14765 0.61 -0.4 3,319,681 + ABZR86_RS14765 0.61 -0.2 3,319,681 + ABZR86_RS14765 0.61 -1.5 3,319,681 + ABZR86_RS14765 0.61 -0.1 3,319,682 - ABZR86_RS14765 0.61 -0.1 3,319,682 - ABZR86_RS14765 0.61 -0.1 3,319,682 - ABZR86_RS14765 0.61 -1.6 3,319,682 - ABZR86_RS14765 0.61 -0.4 3,319,682 - ABZR86_RS14765 0.61 -0.5 3,319,682 - ABZR86_RS14765 0.61 -0.9 3,319,682 - ABZR86_RS14765 0.61 -0.8 3,319,682 - ABZR86_RS14765 0.61 -0.4 3,319,682 - ABZR86_RS14765 0.61 -0.7 3,319,682 - ABZR86_RS14765 0.61 -1.2 3,319,682 - ABZR86_RS14765 0.61 -1.0 3,319,682 - ABZR86_RS14765 0.61 -1.0
Or see this region's nucleotide sequence