Experiment: Nalidixic 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS05170 and ABZR86_RS05175 are separated by 368 nucleotides ABZR86_RS05175 and ABZR86_RS05180 are separated by 63 nucleotides ABZR86_RS05180 and ABZR86_RS05185 are separated by 53 nucleotides
ABZR86_RS05170: ABZR86_RS05170 - transaldolase, at 1,169,847 to 1,170,929
_RS05170
ABZR86_RS05175: ABZR86_RS05175 - alpha/beta hydrolase, at 1,171,298 to 1,172,125
_RS05175
ABZR86_RS05180: ABZR86_RS05180 - hypothetical protein, at 1,172,189 to 1,172,479
_RS05180
ABZR86_RS05185: ABZR86_RS05185 - amino acid permease, at 1,172,533 to 1,173,897
_RS05185
Position (kb)
1171
1172
1173 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1170.395 kb on + strand, within ABZR86_RS05170 at 1170.396 kb on - strand, within ABZR86_RS05170 at 1170.397 kb on + strand, within ABZR86_RS05170 at 1170.397 kb on + strand, within ABZR86_RS05170 at 1170.397 kb on + strand, within ABZR86_RS05170 at 1170.398 kb on - strand, within ABZR86_RS05170 at 1170.398 kb on - strand, within ABZR86_RS05170 at 1170.398 kb on - strand, within ABZR86_RS05170 at 1170.398 kb on - strand, within ABZR86_RS05170 at 1170.398 kb on - strand, within ABZR86_RS05170 at 1170.398 kb on - strand, within ABZR86_RS05170 at 1170.418 kb on + strand, within ABZR86_RS05170 at 1170.418 kb on + strand, within ABZR86_RS05170 at 1170.520 kb on + strand, within ABZR86_RS05170 at 1170.521 kb on - strand, within ABZR86_RS05170 at 1170.757 kb on + strand, within ABZR86_RS05170 at 1170.758 kb on - strand, within ABZR86_RS05170 at 1170.834 kb on - strand at 1170.834 kb on - strand at 1170.834 kb on - strand at 1170.834 kb on - strand at 1170.835 kb on + strand at 1170.836 kb on - strand at 1170.836 kb on - strand at 1170.836 kb on - strand at 1171.110 kb on + strand at 1171.110 kb on + strand at 1171.111 kb on - strand at 1171.122 kb on + strand at 1171.123 kb on - strand at 1171.266 kb on + strand at 1171.266 kb on + strand at 1171.266 kb on + strand at 1171.267 kb on - strand at 1171.267 kb on - strand at 1171.267 kb on - strand at 1171.518 kb on - strand, within ABZR86_RS05175 at 1171.518 kb on - strand, within ABZR86_RS05175 at 1171.610 kb on + strand, within ABZR86_RS05175 at 1171.610 kb on + strand, within ABZR86_RS05175 at 1171.610 kb on + strand, within ABZR86_RS05175 at 1171.610 kb on + strand, within ABZR86_RS05175 at 1171.610 kb on + strand, within ABZR86_RS05175 at 1171.610 kb on + strand, within ABZR86_RS05175 at 1171.610 kb on + strand, within ABZR86_RS05175 at 1171.793 kb on + strand, within ABZR86_RS05175 at 1171.794 kb on - strand, within ABZR86_RS05175 at 1171.884 kb on - strand, within ABZR86_RS05175 at 1171.884 kb on - strand, within ABZR86_RS05175 at 1171.988 kb on + strand, within ABZR86_RS05175 at 1172.095 kb on + strand at 1172.096 kb on - strand at 1172.193 kb on + strand at 1172.194 kb on - strand at 1172.194 kb on - strand at 1172.194 kb on - strand at 1172.413 kb on - strand, within ABZR86_RS05180 at 1172.413 kb on - strand, within ABZR86_RS05180 at 1172.413 kb on - strand, within ABZR86_RS05180 at 1172.415 kb on + strand, within ABZR86_RS05180 at 1172.416 kb on - strand, within ABZR86_RS05180 at 1172.416 kb on - strand, within ABZR86_RS05180 at 1172.416 kb on - strand, within ABZR86_RS05180 at 1172.506 kb on + strand at 1172.506 kb on + strand at 1172.507 kb on - strand at 1172.534 kb on + strand at 1172.534 kb on + strand at 1172.534 kb on + strand at 1172.535 kb on - strand at 1172.567 kb on + strand at 1172.567 kb on + strand at 1172.568 kb on - strand at 1172.568 kb on - strand at 1172.570 kb on + strand at 1172.571 kb on - strand at 1172.571 kb on - strand at 1172.653 kb on + strand at 1172.654 kb on - strand at 1172.682 kb on - strand, within ABZR86_RS05185 at 1172.690 kb on + strand, within ABZR86_RS05185 at 1172.690 kb on + strand, within ABZR86_RS05185 at 1172.690 kb on + strand, within ABZR86_RS05185 at 1172.690 kb on + strand, within ABZR86_RS05185 at 1172.753 kb on + strand, within ABZR86_RS05185 at 1172.754 kb on - strand, within ABZR86_RS05185 at 1172.849 kb on + strand, within ABZR86_RS05185 at 1172.850 kb on - strand, within ABZR86_RS05185 at 1172.850 kb on - strand, within ABZR86_RS05185 at 1172.850 kb on - strand, within ABZR86_RS05185 at 1172.990 kb on + strand, within ABZR86_RS05185 at 1172.991 kb on - strand, within ABZR86_RS05185 at 1172.991 kb on - strand, within ABZR86_RS05185 at 1172.991 kb on - strand, within ABZR86_RS05185 at 1172.995 kb on - strand, within ABZR86_RS05185 at 1173.125 kb on + strand, within ABZR86_RS05185
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.04 mg/ml remove 1,170,395 + ABZR86_RS05170 0.51 +0.6 1,170,396 - ABZR86_RS05170 0.51 -0.7 1,170,397 + ABZR86_RS05170 0.51 -0.4 1,170,397 + ABZR86_RS05170 0.51 +0.2 1,170,397 + ABZR86_RS05170 0.51 +0.6 1,170,398 - ABZR86_RS05170 0.51 +0.3 1,170,398 - ABZR86_RS05170 0.51 +0.1 1,170,398 - ABZR86_RS05170 0.51 -0.1 1,170,398 - ABZR86_RS05170 0.51 +0.1 1,170,398 - ABZR86_RS05170 0.51 +0.1 1,170,398 - ABZR86_RS05170 0.51 +1.2 1,170,418 + ABZR86_RS05170 0.53 +0.3 1,170,418 + ABZR86_RS05170 0.53 +0.3 1,170,520 + ABZR86_RS05170 0.62 -0.4 1,170,521 - ABZR86_RS05170 0.62 -0.2 1,170,757 + ABZR86_RS05170 0.84 +0.4 1,170,758 - ABZR86_RS05170 0.84 +0.3 1,170,834 - -1.0 1,170,834 - +0.4 1,170,834 - +0.0 1,170,834 - +0.1 1,170,835 + -1.1 1,170,836 - -0.4 1,170,836 - -0.9 1,170,836 - +0.4 1,171,110 + +0.6 1,171,110 + +0.7 1,171,111 - +0.3 1,171,122 + -0.8 1,171,123 - -1.3 1,171,266 + +0.4 1,171,266 + +0.2 1,171,266 + +0.1 1,171,267 - +0.5 1,171,267 - -0.5 1,171,267 - -1.1 1,171,518 - ABZR86_RS05175 0.27 -1.8 1,171,518 - ABZR86_RS05175 0.27 +0.1 1,171,610 + ABZR86_RS05175 0.38 +0.4 1,171,610 + ABZR86_RS05175 0.38 -0.2 1,171,610 + ABZR86_RS05175 0.38 +0.0 1,171,610 + ABZR86_RS05175 0.38 +0.0 1,171,610 + ABZR86_RS05175 0.38 +0.0 1,171,610 + ABZR86_RS05175 0.38 -0.7 1,171,610 + ABZR86_RS05175 0.38 -0.2 1,171,793 + ABZR86_RS05175 0.60 +0.3 1,171,794 - ABZR86_RS05175 0.60 -0.7 1,171,884 - ABZR86_RS05175 0.71 +0.2 1,171,884 - ABZR86_RS05175 0.71 +0.1 1,171,988 + ABZR86_RS05175 0.83 -0.7 1,172,095 + +1.9 1,172,096 - -1.9 1,172,193 + -0.0 1,172,194 - +0.4 1,172,194 - +1.1 1,172,194 - -0.1 1,172,413 - ABZR86_RS05180 0.77 -0.9 1,172,413 - ABZR86_RS05180 0.77 -0.4 1,172,413 - ABZR86_RS05180 0.77 -0.5 1,172,415 + ABZR86_RS05180 0.78 -0.6 1,172,416 - ABZR86_RS05180 0.78 +0.7 1,172,416 - ABZR86_RS05180 0.78 -0.1 1,172,416 - ABZR86_RS05180 0.78 -0.6 1,172,506 + +0.0 1,172,506 + -1.4 1,172,507 - -0.3 1,172,534 + -0.7 1,172,534 + -0.1 1,172,534 + -0.8 1,172,535 - +0.2 1,172,567 + +0.0 1,172,567 + +0.3 1,172,568 - -0.0 1,172,568 - -1.9 1,172,570 + +0.0 1,172,571 - -0.3 1,172,571 - -1.4 1,172,653 + +0.9 1,172,654 - -1.2 1,172,682 - ABZR86_RS05185 0.11 -0.3 1,172,690 + ABZR86_RS05185 0.12 +0.3 1,172,690 + ABZR86_RS05185 0.12 -0.8 1,172,690 + ABZR86_RS05185 0.12 +0.4 1,172,690 + ABZR86_RS05185 0.12 +0.4 1,172,753 + ABZR86_RS05185 0.16 -0.4 1,172,754 - ABZR86_RS05185 0.16 +0.2 1,172,849 + ABZR86_RS05185 0.23 -0.1 1,172,850 - ABZR86_RS05185 0.23 +0.0 1,172,850 - ABZR86_RS05185 0.23 -0.2 1,172,850 - ABZR86_RS05185 0.23 +0.3 1,172,990 + ABZR86_RS05185 0.33 +0.8 1,172,991 - ABZR86_RS05185 0.34 +0.3 1,172,991 - ABZR86_RS05185 0.34 -0.1 1,172,991 - ABZR86_RS05185 0.34 +0.2 1,172,995 - ABZR86_RS05185 0.34 -0.2 1,173,125 + ABZR86_RS05185 0.43 -0.3
Or see this region's nucleotide sequence