Experiment: Nalidixic 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS04025 and ABZR86_RS04030 are separated by 852 nucleotides ABZR86_RS04030 and ABZR86_RS04035 are separated by 80 nucleotides
ABZR86_RS04025: ABZR86_RS04025 - hypothetical protein, at 886,301 to 886,795
_RS04025
ABZR86_RS04030: ABZR86_RS04030 - SDR family oxidoreductase, at 887,648 to 888,430
_RS04030
ABZR86_RS04035: ABZR86_RS04035 - LysR substrate-binding domain-containing protein, at 888,511 to 889,425
_RS04035
Position (kb) 887
888
889 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 886.718 kb on + strand, within ABZR86_RS04025 at 886.719 kb on - strand, within ABZR86_RS04025 at 886.719 kb on - strand, within ABZR86_RS04025 at 886.794 kb on - strand at 886.794 kb on - strand at 886.963 kb on + strand at 887.060 kb on + strand at 887.060 kb on + strand at 887.061 kb on - strand at 887.061 kb on - strand at 887.105 kb on + strand at 887.105 kb on + strand at 887.106 kb on - strand at 887.144 kb on + strand at 887.145 kb on - strand at 887.150 kb on + strand at 887.150 kb on + strand at 887.150 kb on + strand at 887.151 kb on - strand at 887.151 kb on - strand at 887.151 kb on - strand at 887.151 kb on - strand at 887.209 kb on - strand at 887.209 kb on - strand at 887.432 kb on - strand at 887.432 kb on - strand at 887.502 kb on + strand at 887.502 kb on + strand at 887.503 kb on - strand at 887.611 kb on + strand at 887.612 kb on - strand at 887.612 kb on - strand at 887.892 kb on + strand, within ABZR86_RS04030 at 887.892 kb on + strand, within ABZR86_RS04030 at 887.892 kb on + strand, within ABZR86_RS04030 at 887.893 kb on - strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.987 kb on + strand, within ABZR86_RS04030 at 887.988 kb on - strand, within ABZR86_RS04030 at 887.988 kb on - strand, within ABZR86_RS04030 at 888.105 kb on + strand, within ABZR86_RS04030 at 888.243 kb on - strand, within ABZR86_RS04030 at 888.243 kb on - strand, within ABZR86_RS04030 at 888.380 kb on + strand at 888.380 kb on + strand at 888.381 kb on - strand at 888.383 kb on - strand at 888.428 kb on + strand at 888.429 kb on - strand at 888.429 kb on - strand at 888.839 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.856 kb on + strand, within ABZR86_RS04035 at 888.857 kb on - strand, within ABZR86_RS04035 at 888.857 kb on - strand, within ABZR86_RS04035 at 889.032 kb on + strand, within ABZR86_RS04035 at 889.232 kb on + strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035 at 889.233 kb on - strand, within ABZR86_RS04035
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.04 mg/ml remove 886,718 + ABZR86_RS04025 0.84 +0.3 886,719 - ABZR86_RS04025 0.84 -0.1 886,719 - ABZR86_RS04025 0.84 +0.2 886,794 - -0.6 886,794 - -0.3 886,963 + +0.3 887,060 + +0.3 887,060 + -0.4 887,061 - +0.3 887,061 - +0.5 887,105 + -0.6 887,105 + -0.2 887,106 - +0.2 887,144 + -1.9 887,145 - -0.3 887,150 + +0.3 887,150 + -0.6 887,150 + -0.5 887,151 - +0.8 887,151 - -0.1 887,151 - -0.0 887,151 - +0.5 887,209 - +2.1 887,209 - -0.2 887,432 - -1.4 887,432 - -0.1 887,502 + +2.1 887,502 + -0.1 887,503 - +0.3 887,611 + -0.3 887,612 - -0.1 887,612 - -0.1 887,892 + ABZR86_RS04030 0.31 -0.6 887,892 + ABZR86_RS04030 0.31 +0.3 887,892 + ABZR86_RS04030 0.31 +0.1 887,893 - ABZR86_RS04030 0.31 +0.1 887,987 + ABZR86_RS04030 0.43 +1.0 887,987 + ABZR86_RS04030 0.43 +1.0 887,987 + ABZR86_RS04030 0.43 +0.1 887,987 + ABZR86_RS04030 0.43 -0.2 887,988 - ABZR86_RS04030 0.43 -3.3 887,988 - ABZR86_RS04030 0.43 +0.6 888,105 + ABZR86_RS04030 0.58 -0.4 888,243 - ABZR86_RS04030 0.76 +0.2 888,243 - ABZR86_RS04030 0.76 -0.0 888,380 + +0.1 888,380 + +0.2 888,381 - +0.2 888,383 - -1.3 888,428 + -0.3 888,429 - +0.6 888,429 - -0.0 888,839 + ABZR86_RS04035 0.36 -0.1 888,856 + ABZR86_RS04035 0.38 -0.1 888,856 + ABZR86_RS04035 0.38 +0.9 888,856 + ABZR86_RS04035 0.38 +0.6 888,856 + ABZR86_RS04035 0.38 +0.4 888,856 + ABZR86_RS04035 0.38 -0.5 888,857 - ABZR86_RS04035 0.38 +0.5 888,857 - ABZR86_RS04035 0.38 -0.6 889,032 + ABZR86_RS04035 0.57 +0.1 889,232 + ABZR86_RS04035 0.79 +0.7 889,233 - ABZR86_RS04035 0.79 -0.3 889,233 - ABZR86_RS04035 0.79 -0.0 889,233 - ABZR86_RS04035 0.79 +0.2
Or see this region's nucleotide sequence