Experiment: Nalidixic 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00575 and ABZR86_RS00580 are separated by 116 nucleotides ABZR86_RS00580 and ABZR86_RS00585 are separated by 97 nucleotides
ABZR86_RS00575: ABZR86_RS00575 - tRNA glutamyl-Q(34) synthetase GluQRS, at 108,627 to 109,493
_RS00575
ABZR86_RS00580: ABZR86_RS00580 - protease HtpX, at 109,610 to 110,500
_RS00580
ABZR86_RS00585: ABZR86_RS00585 - molecular chaperone HtpG, at 110,598 to 112,460
_RS00585
Position (kb) 109
110
111 Strain fitness (log2 ratio) -2
-1
0
1
2 at 108.856 kb on + strand, within ABZR86_RS00575 at 108.857 kb on - strand, within ABZR86_RS00575 at 108.985 kb on + strand, within ABZR86_RS00575 at 108.986 kb on - strand, within ABZR86_RS00575 at 108.991 kb on + strand, within ABZR86_RS00575 at 108.992 kb on - strand, within ABZR86_RS00575 at 108.992 kb on - strand, within ABZR86_RS00575 at 108.992 kb on - strand, within ABZR86_RS00575 at 108.992 kb on - strand, within ABZR86_RS00575 at 108.992 kb on - strand, within ABZR86_RS00575 at 108.992 kb on - strand, within ABZR86_RS00575 at 109.250 kb on - strand, within ABZR86_RS00575 at 109.486 kb on + strand at 109.487 kb on - strand at 109.487 kb on - strand at 109.504 kb on + strand at 109.504 kb on + strand at 109.504 kb on + strand at 109.557 kb on + strand at 109.636 kb on + strand at 109.636 kb on + strand at 109.636 kb on + strand at 109.637 kb on - strand at 109.743 kb on - strand, within ABZR86_RS00580 at 109.743 kb on - strand, within ABZR86_RS00580 at 109.743 kb on - strand, within ABZR86_RS00580 at 109.743 kb on - strand, within ABZR86_RS00580 at 109.926 kb on - strand, within ABZR86_RS00580 at 109.926 kb on - strand, within ABZR86_RS00580 at 110.110 kb on + strand, within ABZR86_RS00580 at 110.111 kb on - strand, within ABZR86_RS00580 at 110.205 kb on - strand, within ABZR86_RS00580 at 110.205 kb on - strand, within ABZR86_RS00580 at 110.550 kb on + strand at 110.550 kb on + strand at 110.551 kb on - strand at 110.551 kb on - strand at 110.668 kb on - strand at 110.976 kb on + strand, within ABZR86_RS00585 at 111.192 kb on + strand, within ABZR86_RS00585 at 111.324 kb on + strand, within ABZR86_RS00585 at 111.325 kb on - strand, within ABZR86_RS00585 at 111.325 kb on - strand, within ABZR86_RS00585 at 111.336 kb on + strand, within ABZR86_RS00585 at 111.336 kb on + strand, within ABZR86_RS00585 at 111.336 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.423 kb on + strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.424 kb on - strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.492 kb on + strand, within ABZR86_RS00585 at 111.493 kb on - strand, within ABZR86_RS00585 at 111.493 kb on - strand, within ABZR86_RS00585 at 111.493 kb on - strand, within ABZR86_RS00585
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.04 mg/ml remove 108,856 + ABZR86_RS00575 0.26 +0.3 108,857 - ABZR86_RS00575 0.27 -0.8 108,985 + ABZR86_RS00575 0.41 -0.3 108,986 - ABZR86_RS00575 0.41 -0.8 108,991 + ABZR86_RS00575 0.42 -0.9 108,992 - ABZR86_RS00575 0.42 +0.0 108,992 - ABZR86_RS00575 0.42 -1.8 108,992 - ABZR86_RS00575 0.42 -0.2 108,992 - ABZR86_RS00575 0.42 +0.1 108,992 - ABZR86_RS00575 0.42 +1.0 108,992 - ABZR86_RS00575 0.42 -0.3 109,250 - ABZR86_RS00575 0.72 +0.8 109,486 + +1.2 109,487 - +0.4 109,487 - +2.0 109,504 + -0.3 109,504 + -0.5 109,504 + -0.3 109,557 + -0.6 109,636 + +0.3 109,636 + -1.3 109,636 + -1.3 109,637 - -0.2 109,743 - ABZR86_RS00580 0.15 +0.0 109,743 - ABZR86_RS00580 0.15 -0.9 109,743 - ABZR86_RS00580 0.15 -0.2 109,743 - ABZR86_RS00580 0.15 -0.3 109,926 - ABZR86_RS00580 0.35 +1.9 109,926 - ABZR86_RS00580 0.35 -1.0 110,110 + ABZR86_RS00580 0.56 -0.2 110,111 - ABZR86_RS00580 0.56 -0.8 110,205 - ABZR86_RS00580 0.67 +0.6 110,205 - ABZR86_RS00580 0.67 -0.3 110,550 + +0.1 110,550 + +0.4 110,551 - -0.3 110,551 - -1.6 110,668 - +0.0 110,976 + ABZR86_RS00585 0.20 +0.2 111,192 + ABZR86_RS00585 0.32 -0.5 111,324 + ABZR86_RS00585 0.39 -0.2 111,325 - ABZR86_RS00585 0.39 +0.6 111,325 - ABZR86_RS00585 0.39 -0.1 111,336 + ABZR86_RS00585 0.40 +1.7 111,336 + ABZR86_RS00585 0.40 +0.1 111,336 + ABZR86_RS00585 0.40 -0.1 111,423 + ABZR86_RS00585 0.44 -0.3 111,423 + ABZR86_RS00585 0.44 -0.9 111,423 + ABZR86_RS00585 0.44 +0.4 111,423 + ABZR86_RS00585 0.44 -0.2 111,423 + ABZR86_RS00585 0.44 -0.1 111,424 - ABZR86_RS00585 0.44 +0.6 111,424 - ABZR86_RS00585 0.44 -0.1 111,424 - ABZR86_RS00585 0.44 +0.6 111,424 - ABZR86_RS00585 0.44 -0.5 111,424 - ABZR86_RS00585 0.44 -0.4 111,424 - ABZR86_RS00585 0.44 +0.9 111,424 - ABZR86_RS00585 0.44 -1.2 111,492 + ABZR86_RS00585 0.48 +0.6 111,492 + ABZR86_RS00585 0.48 +0.2 111,492 + ABZR86_RS00585 0.48 -0.5 111,492 + ABZR86_RS00585 0.48 -0.1 111,492 + ABZR86_RS00585 0.48 -0.2 111,492 + ABZR86_RS00585 0.48 -0.6 111,492 + ABZR86_RS00585 0.48 +0.2 111,493 - ABZR86_RS00585 0.48 -0.7 111,493 - ABZR86_RS00585 0.48 +1.0 111,493 - ABZR86_RS00585 0.48 +0.4
Or see this region's nucleotide sequence