Experiment: Nalidixic 0.04 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt ABZR86_RS00040 and ABZR86_RS00045 are separated by 43 nucleotides ABZR86_RS00045 and ABZR86_RS00050 are separated by 252 nucleotides
ABZR86_RS00040: ABZR86_RS00040 - hypothetical protein, at 8,326 to 9,372
_RS00040
ABZR86_RS00045: ABZR86_RS00045 - hypothetical protein, at 9,416 to 10,147
_RS00045
ABZR86_RS00050: ABZR86_RS00050 - AraC family transcriptional regulator, at 10,400 to 11,257
_RS00050
Position (kb) 9
10
11 Strain fitness (log2 ratio) -2
-1
0
1
2 at 8.435 kb on + strand, within ABZR86_RS00040 at 8.435 kb on + strand, within ABZR86_RS00040 at 8.436 kb on - strand, within ABZR86_RS00040 at 8.526 kb on + strand, within ABZR86_RS00040 at 8.681 kb on + strand, within ABZR86_RS00040 at 8.815 kb on + strand, within ABZR86_RS00040 at 8.815 kb on + strand, within ABZR86_RS00040 at 8.815 kb on + strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.816 kb on - strand, within ABZR86_RS00040 at 8.871 kb on + strand, within ABZR86_RS00040 at 8.997 kb on - strand, within ABZR86_RS00040 at 9.090 kb on + strand, within ABZR86_RS00040 at 9.090 kb on + strand, within ABZR86_RS00040 at 9.151 kb on + strand, within ABZR86_RS00040 at 9.152 kb on - strand, within ABZR86_RS00040 at 9.205 kb on + strand, within ABZR86_RS00040 at 9.435 kb on + strand at 9.435 kb on + strand at 9.522 kb on + strand, within ABZR86_RS00045 at 9.522 kb on + strand, within ABZR86_RS00045 at 9.523 kb on - strand, within ABZR86_RS00045 at 9.523 kb on - strand, within ABZR86_RS00045 at 9.525 kb on + strand, within ABZR86_RS00045 at 9.526 kb on - strand, within ABZR86_RS00045 at 9.532 kb on - strand, within ABZR86_RS00045 at 9.627 kb on + strand, within ABZR86_RS00045 at 9.627 kb on + strand, within ABZR86_RS00045 at 9.627 kb on + strand, within ABZR86_RS00045 at 9.627 kb on + strand, within ABZR86_RS00045 at 9.628 kb on - strand, within ABZR86_RS00045 at 9.634 kb on - strand, within ABZR86_RS00045 at 9.697 kb on - strand, within ABZR86_RS00045 at 9.727 kb on - strand, within ABZR86_RS00045 at 9.774 kb on + strand, within ABZR86_RS00045 at 9.774 kb on + strand, within ABZR86_RS00045 at 9.774 kb on + strand, within ABZR86_RS00045 at 9.774 kb on + strand, within ABZR86_RS00045 at 9.775 kb on - strand, within ABZR86_RS00045 at 9.775 kb on - strand, within ABZR86_RS00045 at 9.775 kb on - strand, within ABZR86_RS00045 at 9.775 kb on - strand, within ABZR86_RS00045 at 9.842 kb on + strand, within ABZR86_RS00045 at 9.843 kb on - strand, within ABZR86_RS00045 at 9.843 kb on - strand, within ABZR86_RS00045 at 9.967 kb on - strand, within ABZR86_RS00045 at 9.967 kb on - strand, within ABZR86_RS00045 at 9.999 kb on + strand, within ABZR86_RS00045 at 9.999 kb on + strand, within ABZR86_RS00045 at 10.000 kb on - strand, within ABZR86_RS00045 at 10.194 kb on + strand at 10.195 kb on - strand at 10.364 kb on - strand at 10.394 kb on - strand at 10.394 kb on - strand at 10.607 kb on + strand, within ABZR86_RS00050 at 11.126 kb on - strand, within ABZR86_RS00050 at 11.131 kb on + strand, within ABZR86_RS00050 at 11.131 kb on + strand, within ABZR86_RS00050 at 11.131 kb on + strand, within ABZR86_RS00050 at 11.132 kb on - strand, within ABZR86_RS00050 at 11.132 kb on - strand, within ABZR86_RS00050
Per-strain Table
Position Strand Gene LocusTag Fraction Nalidixic 0.04 mg/ml remove 8,435 + ABZR86_RS00040 0.10 -0.6 8,435 + ABZR86_RS00040 0.10 +0.5 8,436 - ABZR86_RS00040 0.11 -0.7 8,526 + ABZR86_RS00040 0.19 -0.4 8,681 + ABZR86_RS00040 0.34 +0.8 8,815 + ABZR86_RS00040 0.47 +0.4 8,815 + ABZR86_RS00040 0.47 +0.0 8,815 + ABZR86_RS00040 0.47 +0.5 8,816 - ABZR86_RS00040 0.47 +0.5 8,816 - ABZR86_RS00040 0.47 +2.0 8,816 - ABZR86_RS00040 0.47 +1.2 8,816 - ABZR86_RS00040 0.47 -0.5 8,816 - ABZR86_RS00040 0.47 +0.5 8,816 - ABZR86_RS00040 0.47 -0.9 8,816 - ABZR86_RS00040 0.47 +0.1 8,871 + ABZR86_RS00040 0.52 +0.5 8,997 - ABZR86_RS00040 0.64 +0.3 9,090 + ABZR86_RS00040 0.73 +0.9 9,090 + ABZR86_RS00040 0.73 -0.1 9,151 + ABZR86_RS00040 0.79 -0.0 9,152 - ABZR86_RS00040 0.79 +0.2 9,205 + ABZR86_RS00040 0.84 -0.1 9,435 + -0.9 9,435 + -1.5 9,522 + ABZR86_RS00045 0.14 -0.9 9,522 + ABZR86_RS00045 0.14 -0.1 9,523 - ABZR86_RS00045 0.15 +0.3 9,523 - ABZR86_RS00045 0.15 -0.4 9,525 + ABZR86_RS00045 0.15 +0.9 9,526 - ABZR86_RS00045 0.15 +0.1 9,532 - ABZR86_RS00045 0.16 -0.4 9,627 + ABZR86_RS00045 0.29 +0.4 9,627 + ABZR86_RS00045 0.29 +0.4 9,627 + ABZR86_RS00045 0.29 +0.6 9,627 + ABZR86_RS00045 0.29 -0.0 9,628 - ABZR86_RS00045 0.29 -0.5 9,634 - ABZR86_RS00045 0.30 -0.3 9,697 - ABZR86_RS00045 0.38 +0.1 9,727 - ABZR86_RS00045 0.42 +0.2 9,774 + ABZR86_RS00045 0.49 +0.5 9,774 + ABZR86_RS00045 0.49 +0.1 9,774 + ABZR86_RS00045 0.49 -0.4 9,774 + ABZR86_RS00045 0.49 -2.7 9,775 - ABZR86_RS00045 0.49 +0.1 9,775 - ABZR86_RS00045 0.49 -0.2 9,775 - ABZR86_RS00045 0.49 -0.4 9,775 - ABZR86_RS00045 0.49 -1.1 9,842 + ABZR86_RS00045 0.58 +0.4 9,843 - ABZR86_RS00045 0.58 +1.4 9,843 - ABZR86_RS00045 0.58 +0.2 9,967 - ABZR86_RS00045 0.75 +0.0 9,967 - ABZR86_RS00045 0.75 +1.3 9,999 + ABZR86_RS00045 0.80 -0.2 9,999 + ABZR86_RS00045 0.80 +0.2 10,000 - ABZR86_RS00045 0.80 -0.5 10,194 + +0.7 10,195 - -0.4 10,364 - -0.1 10,394 - -0.2 10,394 - +0.0 10,607 + ABZR86_RS00050 0.24 -0.4 11,126 - ABZR86_RS00050 0.85 -0.3 11,131 + ABZR86_RS00050 0.85 -0.2 11,131 + ABZR86_RS00050 0.85 -2.0 11,131 + ABZR86_RS00050 0.85 -0.2 11,132 - ABZR86_RS00050 0.85 -1.0 11,132 - ABZR86_RS00050 0.85 -0.1
Or see this region's nucleotide sequence