Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_2612

Experiment: Polymyxin B sulfate 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntcobA and Synpcc7942_2611 are separated by 42 nucleotidesSynpcc7942_2611 and thrC are separated by 70 nucleotidesthrC and cbbZp are separated by 120 nucleotides Synpcc7942_2610: cobA - uroporphyrin-III C-methyltransferase, at 2,692,153 to 2,692,950 cobA Synpcc7942_2611: Synpcc7942_2611 - hypothetical protein, at 2,692,993 to 2,693,757 _2611 Synpcc7942_2612: thrC - threonine synthase, at 2,693,828 to 2,694,928 thrC Synpcc7942_2613: cbbZp - phosphoglycolate phosphatase, at 2,695,049 to 2,695,870 cbbZp Position (kb) 2693 2694 2695Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2692.944 kb on + strandat 2693.014 kb on + strandat 2693.697 kb on + strandat 2693.697 kb on + strandat 2693.697 kb on + strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.705 kb on - strandat 2693.720 kb on + strandat 2693.728 kb on - strandat 2693.728 kb on - strandat 2693.737 kb on + strandat 2693.750 kb on - strandat 2693.750 kb on - strandat 2694.965 kb on - strandat 2695.084 kb on + strandat 2695.085 kb on + strandat 2695.085 kb on + strandat 2695.087 kb on - strandat 2695.093 kb on - strandat 2695.108 kb on + strandat 2695.108 kb on + strandat 2695.116 kb on - strandat 2695.116 kb on - strandat 2695.116 kb on - strandat 2695.126 kb on - strandat 2695.127 kb on - strandat 2695.136 kb on - strand, within cbbZpat 2695.149 kb on + strand, within cbbZpat 2695.157 kb on - strand, within cbbZpat 2695.178 kb on + strand, within cbbZpat 2695.205 kb on + strand, within cbbZpat 2695.220 kb on + strand, within cbbZpat 2695.223 kb on + strand, within cbbZpat 2695.231 kb on - strand, within cbbZpat 2695.231 kb on - strand, within cbbZpat 2695.246 kb on - strand, within cbbZpat 2695.273 kb on - strand, within cbbZpat 2695.280 kb on - strand, within cbbZpat 2695.280 kb on - strandat 2695.280 kb on - strand, within cbbZpat 2695.281 kb on - strand, within cbbZpat 2695.294 kb on + strand, within cbbZpat 2695.311 kb on + strand, within cbbZpat 2695.311 kb on + strand, within cbbZpat 2695.325 kb on + strand, within cbbZpat 2695.330 kb on + strand, within cbbZpat 2695.384 kb on + strand, within cbbZpat 2695.384 kb on + strand, within cbbZpat 2695.389 kb on + strand, within cbbZpat 2695.392 kb on - strand, within cbbZpat 2695.397 kb on - strand, within cbbZpat 2695.423 kb on + strand, within cbbZpat 2695.432 kb on + strand, within cbbZpat 2695.432 kb on - strand, within cbbZpat 2695.440 kb on - strand, within cbbZpat 2695.458 kb on + strand, within cbbZpat 2695.488 kb on - strand, within cbbZpat 2695.492 kb on - strand, within cbbZpat 2695.514 kb on + strand, within cbbZpat 2695.521 kb on + strand, within cbbZpat 2695.529 kb on + strand, within cbbZpat 2695.529 kb on + strand, within cbbZpat 2695.535 kb on - strand, within cbbZpat 2695.537 kb on - strand, within cbbZpat 2695.569 kb on + strand, within cbbZpat 2695.571 kb on + strand, within cbbZpat 2695.588 kb on + strand, within cbbZpat 2695.695 kb on + strand, within cbbZpat 2695.703 kb on - strand, within cbbZpat 2695.715 kb on - strand, within cbbZpat 2695.738 kb on + strand, within cbbZpat 2695.764 kb on + strand, within cbbZpat 2695.788 kb on - strandat 2695.815 kb on - strandat 2695.817 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.2 mg/ml
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2,692,944 + -0.6
2,693,014 + -3.3
2,693,697 + +2.8
2,693,697 + +0.6
2,693,697 + -0.3
2,693,705 - -2.3
2,693,705 - +1.8
2,693,705 - +0.7
2,693,705 - +0.3
2,693,705 - +2.0
2,693,720 + +1.3
2,693,728 - -1.1
2,693,728 - +0.5
2,693,737 + -1.3
2,693,750 - +0.4
2,693,750 - +1.7
2,694,965 - -1.3
2,695,084 + +0.2
2,695,085 + -0.1
2,695,085 + -1.3
2,695,087 - +0.3
2,695,093 - -1.3
2,695,108 + +0.1
2,695,108 + -0.1
2,695,116 - -2.3
2,695,116 - -0.7
2,695,116 - +1.1
2,695,126 - +1.8
2,695,127 - -1.3
2,695,136 - cbbZp Synpcc7942_2613 0.11 -2.1
2,695,149 + cbbZp Synpcc7942_2613 0.12 -1.3
2,695,157 - cbbZp Synpcc7942_2613 0.13 +0.5
2,695,178 + cbbZp Synpcc7942_2613 0.16 +1.5
2,695,205 + cbbZp Synpcc7942_2613 0.19 -1.3
2,695,220 + cbbZp Synpcc7942_2613 0.21 +1.4
2,695,223 + cbbZp Synpcc7942_2613 0.21 +0.8
2,695,231 - cbbZp Synpcc7942_2613 0.22 -0.5
2,695,231 - cbbZp Synpcc7942_2613 0.22 -0.7
2,695,246 - cbbZp Synpcc7942_2613 0.24 +2.4
2,695,273 - cbbZp Synpcc7942_2613 0.27 -1.3
2,695,280 - cbbZp Synpcc7942_2613 0.28 -0.6
2,695,280 - +1.3
2,695,280 - cbbZp Synpcc7942_2613 0.28 +0.2
2,695,281 - cbbZp Synpcc7942_2613 0.28 -0.2
2,695,294 + cbbZp Synpcc7942_2613 0.30 +1.0
2,695,311 + cbbZp Synpcc7942_2613 0.32 +0.3
2,695,311 + cbbZp Synpcc7942_2613 0.32 +1.7
2,695,325 + cbbZp Synpcc7942_2613 0.34 +0.3
2,695,330 + cbbZp Synpcc7942_2613 0.34 -0.3
2,695,384 + cbbZp Synpcc7942_2613 0.41 +1.7
2,695,384 + cbbZp Synpcc7942_2613 0.41 -3.9
2,695,389 + cbbZp Synpcc7942_2613 0.41 +0.9
2,695,392 - cbbZp Synpcc7942_2613 0.42 -0.4
2,695,397 - cbbZp Synpcc7942_2613 0.42 +0.6
2,695,423 + cbbZp Synpcc7942_2613 0.45 +0.0
2,695,432 + cbbZp Synpcc7942_2613 0.47 -0.7
2,695,432 - cbbZp Synpcc7942_2613 0.47 -1.3
2,695,440 - cbbZp Synpcc7942_2613 0.48 +1.7
2,695,458 + cbbZp Synpcc7942_2613 0.50 +1.0
2,695,488 - cbbZp Synpcc7942_2613 0.53 +1.3
2,695,492 - cbbZp Synpcc7942_2613 0.54 -1.3
2,695,514 + cbbZp Synpcc7942_2613 0.57 -3.9
2,695,521 + cbbZp Synpcc7942_2613 0.57 -1.3
2,695,529 + cbbZp Synpcc7942_2613 0.58 +1.0
2,695,529 + cbbZp Synpcc7942_2613 0.58 +1.7
2,695,535 - cbbZp Synpcc7942_2613 0.59 +1.4
2,695,537 - cbbZp Synpcc7942_2613 0.59 -1.3
2,695,569 + cbbZp Synpcc7942_2613 0.63 +0.9
2,695,571 + cbbZp Synpcc7942_2613 0.64 +0.3
2,695,588 + cbbZp Synpcc7942_2613 0.66 +0.5
2,695,695 + cbbZp Synpcc7942_2613 0.79 -1.0
2,695,703 - cbbZp Synpcc7942_2613 0.80 +0.3
2,695,715 - cbbZp Synpcc7942_2613 0.81 +1.2
2,695,738 + cbbZp Synpcc7942_2613 0.84 +0.3
2,695,764 + cbbZp Synpcc7942_2613 0.87 -2.3
2,695,788 - +0.8
2,695,815 - -0.3
2,695,817 + +0.6

Or see this region's nucleotide sequence