Strain Fitness in Synechococcus elongatus PCC 7942 around Synpcc7942_0439

Experiment: Polymyxin B sulfate 0.2 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSynpcc7942_0437 and Synpcc7942_0438 overlap by 41 nucleotidesSynpcc7942_0438 and chlM are separated by 115 nucleotideschlM and nagA are separated by 45 nucleotides Synpcc7942_0437: Synpcc7942_0437 - putative glutathione peroxidase, at 427,463 to 428,029 _0437 Synpcc7942_0438: Synpcc7942_0438 - hypothetical protein, at 427,989 to 428,495 _0438 Synpcc7942_0439: chlM - Mg-protoporphyrin IX methyl transferase, at 428,611 to 429,300 chlM Synpcc7942_0440: nagA - N-acetylglucosamine 6-phosphate deacetylase, at 429,346 to 430,473 nagA Position (kb) 428 429 430Strain fitness (log2 ratio) -1 0 1 2at 427.679 kb on - strand, within Synpcc7942_0437at 427.729 kb on + strand, within Synpcc7942_0437at 427.930 kb on - strand, within Synpcc7942_0437at 427.952 kb on - strand, within Synpcc7942_0437at 428.014 kb on + strandat 428.097 kb on + strand, within Synpcc7942_0438at 428.334 kb on - strand, within Synpcc7942_0438at 428.460 kb on - strandat 429.296 kb on + strandat 429.343 kb on + strandat 429.351 kb on - strandat 429.352 kb on - strandat 429.354 kb on + strandat 429.362 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Polymyxin B sulfate 0.2 mg/ml
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427,679 - Synpcc7942_0437 0.38 +0.3
427,729 + Synpcc7942_0437 0.47 +0.8
427,930 - Synpcc7942_0437 0.82 +0.4
427,952 - Synpcc7942_0437 0.86 +0.3
428,014 + +0.7
428,097 + Synpcc7942_0438 0.21 +0.1
428,334 - Synpcc7942_0438 0.68 +0.7
428,460 - +2.0
429,296 + +1.2
429,343 + +0.9
429,351 - -0.5
429,352 - +1.4
429,354 + +0.9
429,362 - +2.3

Or see this region's nucleotide sequence