Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc04133 and SMc04132 are separated by 3 nucleotides SMc04132 and SMc04131 are separated by 10 nucleotides
SMc04133: SMc04133 - oxidoreductase, at 138,820 to 139,968
SMc04133
SMc04132: SMc04132 - hypothetical protein, at 139,972 to 141,135
SMc04132
SMc04131: SMc04131 - hypothetical protein, at 141,146 to 142,561
SMc04131
Position (kb)
139
140
141
142 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 139.011 kb on + strand, within SMc04133 at 139.012 kb on - strand, within SMc04133 at 139.012 kb on - strand, within SMc04133 at 139.012 kb on - strand, within SMc04133 at 139.142 kb on - strand, within SMc04133 at 139.436 kb on - strand, within SMc04133 at 139.436 kb on - strand, within SMc04133 at 139.529 kb on - strand, within SMc04133 at 139.593 kb on + strand, within SMc04133 at 139.594 kb on - strand, within SMc04133 at 139.762 kb on + strand, within SMc04133 at 140.015 kb on - strand at 140.023 kb on - strand at 140.217 kb on + strand, within SMc04132 at 140.383 kb on + strand, within SMc04132 at 140.384 kb on - strand, within SMc04132 at 140.479 kb on + strand, within SMc04132 at 140.479 kb on + strand, within SMc04132 at 140.479 kb on + strand, within SMc04132 at 140.480 kb on - strand, within SMc04132 at 140.480 kb on - strand, within SMc04132 at 140.480 kb on - strand, within SMc04132 at 140.480 kb on - strand, within SMc04132 at 140.491 kb on + strand, within SMc04132 at 140.491 kb on + strand, within SMc04132 at 140.492 kb on - strand, within SMc04132 at 140.492 kb on - strand, within SMc04132 at 140.492 kb on - strand, within SMc04132 at 140.726 kb on - strand, within SMc04132 at 140.746 kb on + strand, within SMc04132 at 140.747 kb on - strand, within SMc04132 at 140.747 kb on - strand, within SMc04132 at 140.936 kb on - strand, within SMc04132 at 140.976 kb on - strand, within SMc04132 at 140.976 kb on - strand, within SMc04132 at 141.522 kb on - strand, within SMc04131 at 141.547 kb on + strand, within SMc04131 at 141.747 kb on + strand, within SMc04131 at 141.809 kb on + strand, within SMc04131 at 141.911 kb on + strand, within SMc04131 at 141.911 kb on + strand, within SMc04131 at 141.911 kb on + strand, within SMc04131 at 141.912 kb on - strand, within SMc04131 at 141.912 kb on - strand, within SMc04131 at 141.913 kb on + strand, within SMc04131 at 141.914 kb on - strand, within SMc04131 at 141.914 kb on - strand, within SMc04131
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 139,011 + SMc04133 0.17 -0.0 139,012 - SMc04133 0.17 -0.3 139,012 - SMc04133 0.17 +0.9 139,012 - SMc04133 0.17 -4.1 139,142 - SMc04133 0.28 -1.9 139,436 - SMc04133 0.54 +2.4 139,436 - SMc04133 0.54 +0.9 139,529 - SMc04133 0.62 +1.6 139,593 + SMc04133 0.67 -0.3 139,594 - SMc04133 0.67 +0.3 139,762 + SMc04133 0.82 +0.8 140,015 - -2.1 140,023 - -0.9 140,217 + SMc04132 0.21 -0.3 140,383 + SMc04132 0.35 +0.9 140,384 - SMc04132 0.35 -1.2 140,479 + SMc04132 0.44 +1.1 140,479 + SMc04132 0.44 +0.3 140,479 + SMc04132 0.44 -0.2 140,480 - SMc04132 0.44 +0.2 140,480 - SMc04132 0.44 +0.5 140,480 - SMc04132 0.44 -2.4 140,480 - SMc04132 0.44 -0.3 140,491 + SMc04132 0.45 +1.5 140,491 + SMc04132 0.45 -1.5 140,492 - SMc04132 0.45 +0.7 140,492 - SMc04132 0.45 +0.8 140,492 - SMc04132 0.45 +0.2 140,726 - SMc04132 0.65 +0.4 140,746 + SMc04132 0.66 +1.1 140,747 - SMc04132 0.67 +0.2 140,747 - SMc04132 0.67 -1.6 140,936 - SMc04132 0.83 -0.8 140,976 - SMc04132 0.86 +1.0 140,976 - SMc04132 0.86 +0.8 141,522 - SMc04131 0.27 +0.3 141,547 + SMc04131 0.28 -1.0 141,747 + SMc04131 0.42 -0.7 141,809 + SMc04131 0.47 -2.4 141,911 + SMc04131 0.54 -3.8 141,911 + SMc04131 0.54 +0.5 141,911 + SMc04131 0.54 -0.3 141,912 - SMc04131 0.54 -0.3 141,912 - SMc04131 0.54 -0.4 141,913 + SMc04131 0.54 +0.4 141,914 - SMc04131 0.54 -1.3 141,914 - SMc04131 0.54 -0.0
Or see this region's nucleotide sequence