Strain Fitness in Sinorhizobium meliloti 1021 around SMc03964

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03963 and SMc03964 are separated by 139 nucleotidesSMc03964 and SMc03965 are separated by 1 nucleotides SMc03963: SMc03963 - sulfolipid biosynthesis protein, at 2,956,906 to 2,957,832 SMc03963 SMc03964: SMc03964 - hypothetical protein, at 2,957,972 to 2,958,874 SMc03964 SMc03965: SMc03965 - Holliday junction DNA helicase RuvB, at 2,958,876 to 2,959,916 SMc03965 Position (kb) 2957 2958 2959Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 2957.097 kb on + strand, within SMc03963at 2957.098 kb on - strand, within SMc03963at 2957.098 kb on - strand, within SMc03963at 2957.101 kb on + strand, within SMc03963at 2957.101 kb on + strand, within SMc03963at 2957.102 kb on - strand, within SMc03963at 2957.102 kb on - strand, within SMc03963at 2957.104 kb on + strand, within SMc03963at 2957.105 kb on - strand, within SMc03963at 2957.332 kb on + strand, within SMc03963at 2957.333 kb on - strand, within SMc03963at 2957.342 kb on + strand, within SMc03963at 2957.422 kb on + strand, within SMc03963at 2957.476 kb on + strand, within SMc03963at 2957.476 kb on + strand, within SMc03963at 2958.080 kb on - strand, within SMc03964at 2958.080 kb on - strand, within SMc03964at 2958.080 kb on - strand, within SMc03964at 2958.080 kb on - strand, within SMc03964at 2958.087 kb on + strand, within SMc03964at 2958.087 kb on + strand, within SMc03964at 2958.088 kb on - strand, within SMc03964at 2958.171 kb on - strand, within SMc03964at 2958.230 kb on + strand, within SMc03964at 2958.230 kb on + strand, within SMc03964at 2958.567 kb on + strand, within SMc03964at 2958.568 kb on - strand, within SMc03964at 2958.568 kb on - strand, within SMc03964at 2958.598 kb on - strand, within SMc03964at 2958.650 kb on + strand, within SMc03964at 2958.651 kb on - strand, within SMc03964at 2958.651 kb on - strand, within SMc03964at 2958.759 kb on + strand, within SMc03964at 2958.805 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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2,957,097 + SMc03963 0.21 +0.6
2,957,098 - SMc03963 0.21 +2.2
2,957,098 - SMc03963 0.21 +3.8
2,957,101 + SMc03963 0.21 +1.1
2,957,101 + SMc03963 0.21 +1.3
2,957,102 - SMc03963 0.21 -3.2
2,957,102 - SMc03963 0.21 +0.5
2,957,104 + SMc03963 0.21 +0.7
2,957,105 - SMc03963 0.21 -1.7
2,957,332 + SMc03963 0.46 -0.6
2,957,333 - SMc03963 0.46 +1.8
2,957,342 + SMc03963 0.47 +0.6
2,957,422 + SMc03963 0.56 +0.4
2,957,476 + SMc03963 0.61 +0.2
2,957,476 + SMc03963 0.61 +0.2
2,958,080 - SMc03964 0.12 -3.0
2,958,080 - SMc03964 0.12 -0.1
2,958,080 - SMc03964 0.12 +2.5
2,958,080 - SMc03964 0.12 +0.1
2,958,087 + SMc03964 0.13 -0.1
2,958,087 + SMc03964 0.13 -0.4
2,958,088 - SMc03964 0.13 -0.4
2,958,171 - SMc03964 0.22 -0.7
2,958,230 + SMc03964 0.29 -2.2
2,958,230 + SMc03964 0.29 -2.5
2,958,567 + SMc03964 0.66 +0.9
2,958,568 - SMc03964 0.66 -0.5
2,958,568 - SMc03964 0.66 +0.2
2,958,598 - SMc03964 0.69 +0.3
2,958,650 + SMc03964 0.75 +0.4
2,958,651 - SMc03964 0.75 -2.5
2,958,651 - SMc03964 0.75 +0.6
2,958,759 + SMc03964 0.87 +0.1
2,958,805 - +1.1

Or see this region's nucleotide sequence