Strain Fitness in Sinorhizobium meliloti 1021 around SMc03855

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc03854 and SMc03855 are separated by 14 nucleotidesSMc03855 and SMc03856 overlap by 4 nucleotides SMc03854: SMc03854 - cell division protein, at 3,518,229 to 3,519,875 SMc03854 SMc03855: SMc03855 - hypothetical protein, at 3,519,890 to 3,521,164 SMc03855 SMc03856: SMc03856 - diaminopimelate epimerase, at 3,521,161 to 3,522,081 SMc03856 Position (kb) 3519 3520 3521 3522Strain fitness (log2 ratio) -1 0 1 2at 3520.293 kb on - strand, within SMc03855at 3520.482 kb on - strand, within SMc03855at 3520.579 kb on - strand, within SMc03855at 3521.119 kb on - strandat 3521.119 kb on - strandat 3522.123 kb on - strandat 3522.123 kb on - strandat 3522.123 kb on - strandat 3522.147 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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3,520,293 - SMc03855 0.32 +2.4
3,520,482 - SMc03855 0.46 +1.7
3,520,579 - SMc03855 0.54 +1.0
3,521,119 - +1.5
3,521,119 - +0.7
3,522,123 - -0.5
3,522,123 - +0.1
3,522,123 - -0.8
3,522,147 - +0.3

Or see this region's nucleotide sequence