Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03184 and SMc03185 are separated by 0 nucleotides SMc03185 and SMc03186 are separated by 92 nucleotides SMc03186 and SMc03187 are separated by 44 nucleotides SMc03187 and SMc03188 are separated by 38 nucleotides
SMc03184: SMc03184 - PH adaptation potassium efflux system G transmembrane protein, at 3,149,450 to 3,149,815
SMc03184
SMc03185: SMc03185 - NADPH dehydrogenase quinone reductase transmembrane protein, at 3,149,816 to 3,150,628
SMc03185
SMc03186: SMc03186 - transcriptional regulator, at 3,150,721 to 3,151,653
SMc03186
SMc03187: SMc03187 - precorrin-4 C(11)-methyltransferase, at 3,151,698 to 3,152,456
SMc03187
SMc03188: SMc03188 - precorrin-6Y C5,15-methyltransferase (decarboxylating) protein, at 3,152,495 to 3,153,736
SMc03188
Position (kb)
3150
3151
3152 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3
4 at 3149.748 kb on - strand, within SMc03184 at 3149.813 kb on + strand at 3149.813 kb on + strand at 3149.813 kb on + strand at 3149.814 kb on - strand at 3149.814 kb on - strand at 3149.817 kb on + strand at 3149.818 kb on - strand at 3149.818 kb on - strand at 3149.818 kb on - strand at 3149.925 kb on + strand, within SMc03185 at 3149.926 kb on - strand, within SMc03185 at 3149.926 kb on - strand, within SMc03185 at 3150.045 kb on + strand, within SMc03185 at 3150.084 kb on + strand, within SMc03185 at 3150.084 kb on + strand, within SMc03185 at 3150.151 kb on - strand, within SMc03185 at 3150.151 kb on - strand, within SMc03185 at 3150.245 kb on - strand, within SMc03185 at 3150.261 kb on + strand, within SMc03185 at 3150.387 kb on - strand, within SMc03185 at 3150.511 kb on - strand, within SMc03185 at 3150.661 kb on - strand at 3150.665 kb on - strand at 3150.719 kb on + strand at 3150.831 kb on - strand, within SMc03186 at 3150.926 kb on - strand, within SMc03186 at 3150.926 kb on - strand, within SMc03186 at 3150.926 kb on - strand, within SMc03186 at 3151.361 kb on - strand, within SMc03186 at 3152.505 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 3,149,748 - SMc03184 0.81 +0.6 3,149,813 + +0.4 3,149,813 + -2.4 3,149,813 + -3.1 3,149,814 - -0.0 3,149,814 - -0.4 3,149,817 + +4.0 3,149,818 - -0.2 3,149,818 - -0.1 3,149,818 - +0.2 3,149,925 + SMc03185 0.13 -1.2 3,149,926 - SMc03185 0.14 -0.2 3,149,926 - SMc03185 0.14 -4.3 3,150,045 + SMc03185 0.28 -2.8 3,150,084 + SMc03185 0.33 +0.7 3,150,084 + SMc03185 0.33 -0.3 3,150,151 - SMc03185 0.41 +0.5 3,150,151 - SMc03185 0.41 +1.1 3,150,245 - SMc03185 0.53 -2.5 3,150,261 + SMc03185 0.55 +2.3 3,150,387 - SMc03185 0.70 +0.4 3,150,511 - SMc03185 0.85 -0.4 3,150,661 - -1.8 3,150,665 - -0.3 3,150,719 + -2.2 3,150,831 - SMc03186 0.12 -1.5 3,150,926 - SMc03186 0.22 -1.2 3,150,926 - SMc03186 0.22 -3.0 3,150,926 - SMc03186 0.22 -3.2 3,151,361 - SMc03186 0.69 -0.0 3,152,505 - -0.9
Or see this region's nucleotide sequence