Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc03032 and SMc03033 overlap by 4 nucleotides SMc03033 and SMc03034 overlap by 4 nucleotides SMc03034 and SMc03035 are separated by 15 nucleotides
SMc03032: SMc03032 - flagellar basal body P-ring protein, at 727,404 to 728,519
SMc03032
SMc03033: SMc03033 - hypothetical protein, at 728,516 to 729,055
SMc03033
SMc03034: SMc03034 - flagellar basal body L-ring protein, at 729,052 to 729,762
SMc03034
SMc03035: SMc03035 - flagellar transmembrane protein, at 729,778 to 730,269
SMc03035
Position (kb) 728
729
730 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 727.821 kb on + strand, within SMc03032 at 727.822 kb on - strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.040 kb on + strand, within SMc03032 at 728.218 kb on + strand, within SMc03032 at 728.219 kb on - strand, within SMc03032 at 728.219 kb on - strand, within SMc03032 at 728.256 kb on + strand, within SMc03032 at 728.257 kb on - strand, within SMc03032 at 728.334 kb on + strand at 728.708 kb on + strand, within SMc03033 at 728.708 kb on + strand, within SMc03033 at 728.709 kb on - strand, within SMc03033 at 728.709 kb on - strand, within SMc03033 at 728.806 kb on + strand, within SMc03033 at 728.807 kb on - strand, within SMc03033 at 728.858 kb on + strand, within SMc03033 at 728.858 kb on + strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 728.859 kb on - strand, within SMc03033 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.196 kb on + strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.197 kb on - strand, within SMc03034 at 729.286 kb on - strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.296 kb on + strand, within SMc03034 at 729.297 kb on - strand, within SMc03034 at 729.297 kb on - strand, within SMc03034 at 729.653 kb on - strand, within SMc03034 at 729.653 kb on - strand, within SMc03034 at 729.683 kb on - strand, within SMc03034 at 730.014 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 727,821 + SMc03032 0.37 +0.0 727,822 - SMc03032 0.37 -1.4 728,040 + SMc03032 0.57 -0.9 728,040 + SMc03032 0.57 +1.0 728,040 + SMc03032 0.57 +0.7 728,040 + SMc03032 0.57 -1.2 728,218 + SMc03032 0.73 -3.2 728,219 - SMc03032 0.73 -0.4 728,219 - SMc03032 0.73 +0.6 728,256 + SMc03032 0.76 +0.5 728,257 - SMc03032 0.76 +0.7 728,334 + +3.5 728,708 + SMc03033 0.36 -3.5 728,708 + SMc03033 0.36 -1.0 728,709 - SMc03033 0.36 -0.3 728,709 - SMc03033 0.36 -2.6 728,806 + SMc03033 0.54 -0.4 728,807 - SMc03033 0.54 -4.1 728,858 + SMc03033 0.63 +0.5 728,858 + SMc03033 0.63 -4.2 728,859 - SMc03033 0.64 +0.3 728,859 - SMc03033 0.64 -3.4 728,859 - SMc03033 0.64 -0.2 728,859 - SMc03033 0.64 +0.9 729,196 + SMc03034 0.20 -0.9 729,196 + SMc03034 0.20 +3.5 729,196 + SMc03034 0.20 -0.6 729,196 + SMc03034 0.20 -0.5 729,197 - SMc03034 0.20 +1.0 729,197 - SMc03034 0.20 -0.7 729,197 - SMc03034 0.20 -0.4 729,197 - SMc03034 0.20 -1.6 729,286 - SMc03034 0.33 -0.0 729,296 + SMc03034 0.34 -0.2 729,296 + SMc03034 0.34 -0.6 729,296 + SMc03034 0.34 -3.5 729,296 + SMc03034 0.34 +0.8 729,297 - SMc03034 0.34 +0.5 729,297 - SMc03034 0.34 -0.0 729,653 - SMc03034 0.85 -0.1 729,653 - SMc03034 0.85 -2.2 729,683 - SMc03034 0.89 -0.9 730,014 + +1.4
Or see this region's nucleotide sequence