Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02902 and SMc02903 are separated by 6 nucleotides SMc02903 and SMc02904 are separated by 2 nucleotides SMc02904 and SMc02905 overlap by 20 nucleotides
SMc02902: SMc02902 - transcriptional regulator, at 257,736 to 258,428
SMc02902
SMc02903: SMc02903 - hypothetical protein, at 258,435 to 259,415
SMc02903
SMc02904: SMc02904 - hypothetical protein, at 259,418 to 260,143
SMc02904
SMc02905: SMc02905 - DNA polymerase III subunits gamma and tau, at 260,124 to 262,004
SMc02905
Position (kb) 259
260
261 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 258.637 kb on + strand, within SMc02903 at 258.637 kb on + strand, within SMc02903 at 258.689 kb on - strand, within SMc02903 at 258.790 kb on + strand, within SMc02903 at 258.790 kb on + strand, within SMc02903 at 258.848 kb on - strand, within SMc02903 at 258.908 kb on + strand, within SMc02903 at 258.908 kb on + strand, within SMc02903 at 259.052 kb on - strand, within SMc02903 at 259.453 kb on + strand at 259.453 kb on + strand at 259.453 kb on + strand at 259.453 kb on + strand at 259.454 kb on - strand at 259.454 kb on - strand at 259.454 kb on - strand at 259.688 kb on + strand, within SMc02904 at 259.688 kb on + strand, within SMc02904 at 259.689 kb on - strand, within SMc02904 at 259.866 kb on + strand, within SMc02904
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 258,637 + SMc02903 0.21 -0.3 258,637 + SMc02903 0.21 +2.1 258,689 - SMc02903 0.26 -2.1 258,790 + SMc02903 0.36 +0.9 258,790 + SMc02903 0.36 -2.0 258,848 - SMc02903 0.42 -0.8 258,908 + SMc02903 0.48 -0.2 258,908 + SMc02903 0.48 -2.4 259,052 - SMc02903 0.63 -0.2 259,453 + -0.5 259,453 + +0.5 259,453 + -1.6 259,453 + +2.6 259,454 - -2.6 259,454 - -0.3 259,454 - -1.5 259,688 + SMc02904 0.37 -0.4 259,688 + SMc02904 0.37 -0.2 259,689 - SMc02904 0.37 -3.7 259,866 + SMc02904 0.62 +0.7
Or see this region's nucleotide sequence