Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02846 and SMc02847 are separated by 37 nucleotides SMc02847 and SMc02848 are separated by 166 nucleotides SMc02848 and SMc02849 are separated by 84 nucleotides
SMc02846: SMc02846 - sugar kinase, at 195,004 to 195,996
SMc02846
SMc02847: SMc02847 - hypothetical protein, at 196,034 to 196,402
SMc02847
SMc02848: SMc02848 - hypothetical protein, at 196,569 to 197,240
SMc02848
SMc02849: SMc02849 - 2-hydroxyacid dehydrogenase, at 197,325 to 198,329
SMc02849
Position (kb) 196
197 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 195.143 kb on - strand, within SMc02846 at 195.391 kb on + strand, within SMc02846 at 195.460 kb on - strand, within SMc02846 at 195.460 kb on - strand, within SMc02846 at 195.464 kb on - strand, within SMc02846 at 195.475 kb on + strand, within SMc02846 at 195.783 kb on - strand, within SMc02846 at 195.841 kb on + strand, within SMc02846 at 195.867 kb on + strand, within SMc02846 at 195.868 kb on - strand, within SMc02846 at 196.104 kb on + strand, within SMc02847 at 196.129 kb on + strand, within SMc02847 at 196.130 kb on - strand, within SMc02847 at 196.161 kb on + strand, within SMc02847 at 196.190 kb on + strand, within SMc02847 at 196.190 kb on + strand, within SMc02847 at 196.190 kb on + strand, within SMc02847 at 196.191 kb on - strand, within SMc02847 at 196.191 kb on - strand, within SMc02847 at 196.194 kb on + strand, within SMc02847 at 196.195 kb on - strand, within SMc02847 at 196.195 kb on - strand, within SMc02847 at 196.195 kb on - strand, within SMc02847 at 196.195 kb on - strand, within SMc02847 at 196.203 kb on - strand, within SMc02847 at 196.392 kb on - strand at 196.513 kb on - strand at 196.513 kb on - strand at 196.570 kb on + strand at 196.570 kb on + strand at 197.276 kb on - strand at 197.276 kb on - strand at 197.276 kb on - strand at 197.353 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 195,143 - SMc02846 0.14 -1.0 195,391 + SMc02846 0.39 -0.8 195,460 - SMc02846 0.46 -0.1 195,460 - SMc02846 0.46 -0.2 195,464 - SMc02846 0.46 +2.3 195,475 + SMc02846 0.47 -0.5 195,783 - SMc02846 0.78 +1.1 195,841 + SMc02846 0.84 -1.3 195,867 + SMc02846 0.87 -0.7 195,868 - SMc02846 0.87 -0.6 196,104 + SMc02847 0.19 -0.5 196,129 + SMc02847 0.26 -1.5 196,130 - SMc02847 0.26 -0.8 196,161 + SMc02847 0.34 +0.9 196,190 + SMc02847 0.42 +0.7 196,190 + SMc02847 0.42 +0.7 196,190 + SMc02847 0.42 -2.6 196,191 - SMc02847 0.43 -2.9 196,191 - SMc02847 0.43 +0.3 196,194 + SMc02847 0.43 +1.0 196,195 - SMc02847 0.44 +1.2 196,195 - SMc02847 0.44 -0.1 196,195 - SMc02847 0.44 +1.4 196,195 - SMc02847 0.44 +1.5 196,203 - SMc02847 0.46 +1.1 196,392 - +0.3 196,513 - +1.1 196,513 - -2.5 196,570 + -0.5 196,570 + -0.7 197,276 - +2.0 197,276 - -0.1 197,276 - +0.5 197,353 - -4.2
Or see this region's nucleotide sequence