Strain Fitness in Sinorhizobium meliloti 1021 around SMc02822

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02821 and SMc02822 are separated by 7 nucleotidesSMc02822 and SMc02823 are separated by 228 nucleotides SMc02821: SMc02821 - hypothetical protein, at 167,622 to 168,632 SMc02821 SMc02822: SMc02822 - hypothetical protein, at 168,640 to 169,623 SMc02822 SMc02823: SMc02823 - transposase, at 169,852 to 171,015 SMc02823 Position (kb) 168 169 170Strain fitness (log2 ratio) -2 -1 0 1 2at 167.691 kb on + strandat 167.692 kb on - strandat 167.692 kb on - strandat 167.950 kb on - strand, within SMc02821at 168.462 kb on - strand, within SMc02821at 168.462 kb on - strand, within SMc02821at 168.462 kb on - strand, within SMc02821at 168.462 kb on - strand, within SMc02821at 168.501 kb on + strand, within SMc02821at 168.502 kb on - strand, within SMc02821at 168.654 kb on - strandat 169.042 kb on + strand, within SMc02822at 169.043 kb on - strand, within SMc02822at 169.043 kb on - strand, within SMc02822at 169.114 kb on + strand, within SMc02822at 169.275 kb on - strand, within SMc02822at 169.602 kb on - strandat 169.644 kb on + strandat 169.660 kb on + strandat 169.717 kb on - strandat 169.717 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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167,691 + -1.8
167,692 - +0.3
167,692 - -0.6
167,950 - SMc02821 0.32 -0.4
168,462 - SMc02821 0.83 +1.5
168,462 - SMc02821 0.83 +0.8
168,462 - SMc02821 0.83 -1.3
168,462 - SMc02821 0.83 +0.5
168,501 + SMc02821 0.87 +0.7
168,502 - SMc02821 0.87 -0.4
168,654 - +1.8
169,042 + SMc02822 0.41 -1.8
169,043 - SMc02822 0.41 -1.9
169,043 - SMc02822 0.41 -1.0
169,114 + SMc02822 0.48 -1.5
169,275 - SMc02822 0.65 +0.1
169,602 - +0.1
169,644 + +2.2
169,660 + +1.0
169,717 - -0.2
169,717 - -1.0

Or see this region's nucleotide sequence