Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02317 and SMc02318 are separated by 146 nucleotides SMc02318 and SMc02319 are separated by 79 nucleotides SMc02319 and SMc02320 are separated by 70 nucleotides SMc02320 and SMc02321 are separated by 191 nucleotides
SMc02317: SMc02317 - signal peptide protein, at 688,770 to 689,159
SMc02317
SMc02318: SMc02318 - hypothetical protein, at 689,306 to 689,767
SMc02318
SMc02319: SMc02319 - hypothetical protein, at 689,847 to 690,035
SMc02319
SMc02320: SMc02320 - hypothetical protein, at 690,106 to 690,360
SMc02320
SMc02321: SMc02321 - L-rhamnose isomerase (EC 5.3.1.14) <small>(from data)</small>, at 690,552 to 691,844
SMc02321
Position (kb) 689
690
691 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 688.888 kb on + strand, within SMc02317 at 688.888 kb on + strand, within SMc02317 at 688.888 kb on + strand, within SMc02317 at 688.889 kb on - strand, within SMc02317 at 688.964 kb on + strand, within SMc02317 at 688.964 kb on + strand, within SMc02317 at 688.965 kb on - strand, within SMc02317 at 688.965 kb on - strand, within SMc02317 at 688.966 kb on + strand, within SMc02317 at 688.967 kb on - strand, within SMc02317 at 688.967 kb on - strand, within SMc02317 at 689.123 kb on + strand at 689.181 kb on - strand at 689.248 kb on + strand at 689.248 kb on + strand at 689.249 kb on - strand at 689.249 kb on - strand at 689.249 kb on - strand at 689.249 kb on - strand at 689.249 kb on - strand at 689.301 kb on - strand at 689.307 kb on + strand at 689.556 kb on + strand, within SMc02318 at 689.639 kb on + strand at 689.640 kb on - strand, within SMc02318 at 689.908 kb on + strand, within SMc02319 at 689.908 kb on + strand, within SMc02319 at 689.908 kb on + strand, within SMc02319 at 689.908 kb on + strand, within SMc02319 at 689.909 kb on - strand, within SMc02319 at 689.989 kb on + strand, within SMc02319 at 690.089 kb on + strand at 690.090 kb on - strand at 690.090 kb on - strand at 690.090 kb on - strand at 690.097 kb on + strand at 690.168 kb on + strand, within SMc02320 at 690.395 kb on - strand at 690.416 kb on + strand at 690.417 kb on - strand at 690.486 kb on + strand at 690.487 kb on - strand at 690.754 kb on + strand, within SMc02321 at 690.755 kb on - strand, within SMc02321 at 690.797 kb on - strand, within SMc02321 at 690.797 kb on - strand, within SMc02321
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 688,888 + SMc02317 0.30 +0.2 688,888 + SMc02317 0.30 -0.4 688,888 + SMc02317 0.30 +0.5 688,889 - SMc02317 0.31 +0.7 688,964 + SMc02317 0.50 +2.0 688,964 + SMc02317 0.50 +0.1 688,965 - SMc02317 0.50 -0.2 688,965 - SMc02317 0.50 -0.2 688,966 + SMc02317 0.50 -0.3 688,967 - SMc02317 0.51 +1.6 688,967 - SMc02317 0.51 -0.8 689,123 + +2.1 689,181 - -0.1 689,248 + -2.3 689,248 + +1.5 689,249 - -3.2 689,249 - +0.8 689,249 - +0.1 689,249 - +0.5 689,249 - +1.2 689,301 - -0.3 689,307 + +1.4 689,556 + SMc02318 0.54 +0.8 689,639 + +2.0 689,640 - SMc02318 0.72 +0.6 689,908 + SMc02319 0.32 +0.8 689,908 + SMc02319 0.32 +0.1 689,908 + SMc02319 0.32 +0.4 689,908 + SMc02319 0.32 +1.1 689,909 - SMc02319 0.33 +1.2 689,989 + SMc02319 0.75 +1.8 690,089 + -3.0 690,090 - -1.8 690,090 - -2.4 690,090 - -0.8 690,097 + -3.4 690,168 + SMc02320 0.24 -2.4 690,395 - -1.5 690,416 + +1.2 690,417 - +0.3 690,486 + -1.5 690,487 - -3.0 690,754 + SMc02321 0.16 +0.2 690,755 - SMc02321 0.16 -3.8 690,797 - SMc02321 0.19 +0.2 690,797 - SMc02321 0.19 -0.5
Or see this region's nucleotide sequence