Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02241 and SMc02242 are separated by 15 nucleotides SMc02242 and SMc02243 are separated by 2 nucleotides SMc02243 and SMc02244 are separated by 46 nucleotides SMc02244 and SMc02245 overlap by 25 nucleotides
SMc02241: SMc02241 - hypothetical protein, at 605,288 to 606,226
SMc02241
SMc02242: SMc02242 - hypothetical protein, at 606,242 to 606,640
SMc02242
SMc02243: SMc02243 - hypothetical protein, at 606,643 to 607,146
SMc02243
SMc02244: SMc02244 - transmembrane protein, at 607,193 to 608,560
SMc02244
SMc02245: SMc02245 - dihydroorotate dehydrogenase 2, at 608,536 to 609,624
SMc02245
Position (kb) 607
608
609 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 606.278 kb on + strand at 606.343 kb on - strand, within SMc02242 at 606.343 kb on - strand, within SMc02242 at 606.343 kb on - strand, within SMc02242 at 606.388 kb on - strand, within SMc02242 at 606.497 kb on + strand, within SMc02242 at 606.498 kb on - strand, within SMc02242 at 606.498 kb on - strand, within SMc02242 at 606.501 kb on - strand, within SMc02242 at 606.569 kb on + strand, within SMc02242 at 606.794 kb on - strand, within SMc02243 at 606.913 kb on - strand, within SMc02243 at 606.934 kb on + strand, within SMc02243 at 607.016 kb on - strand, within SMc02243 at 607.016 kb on - strand, within SMc02243 at 607.016 kb on - strand, within SMc02243 at 607.027 kb on + strand, within SMc02243 at 607.120 kb on + strand at 607.120 kb on + strand at 607.166 kb on - strand at 607.181 kb on - strand at 607.267 kb on + strand at 607.268 kb on - strand at 607.268 kb on - strand at 607.466 kb on + strand, within SMc02244 at 607.467 kb on - strand, within SMc02244 at 607.467 kb on - strand, within SMc02244 at 607.552 kb on + strand, within SMc02244 at 607.552 kb on + strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.553 kb on - strand, within SMc02244 at 607.554 kb on + strand, within SMc02244 at 607.554 kb on + strand, within SMc02244 at 607.555 kb on - strand, within SMc02244 at 607.628 kb on + strand, within SMc02244 at 607.628 kb on + strand, within SMc02244 at 607.628 kb on + strand, within SMc02244 at 607.629 kb on - strand, within SMc02244 at 607.673 kb on + strand, within SMc02244 at 607.674 kb on - strand, within SMc02244 at 607.865 kb on + strand, within SMc02244 at 607.954 kb on + strand, within SMc02244 at 607.955 kb on - strand, within SMc02244 at 608.079 kb on - strand, within SMc02244 at 608.291 kb on + strand, within SMc02244 at 608.291 kb on + strand, within SMc02244 at 608.291 kb on + strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.292 kb on - strand, within SMc02244 at 608.293 kb on + strand, within SMc02244 at 608.293 kb on + strand, within SMc02244 at 608.293 kb on + strand, within SMc02244 at 608.294 kb on - strand, within SMc02244 at 608.294 kb on - strand, within SMc02244 at 608.578 kb on + strand at 608.579 kb on - strand at 608.678 kb on + strand, within SMc02245 at 608.679 kb on - strand, within SMc02245 at 609.167 kb on + strand, within SMc02245 at 609.167 kb on + strand, within SMc02245 at 609.208 kb on - strand, within SMc02245 at 609.280 kb on - strand, within SMc02245
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 606,278 + -0.6 606,343 - SMc02242 0.25 -1.2 606,343 - SMc02242 0.25 -2.7 606,343 - SMc02242 0.25 -0.7 606,388 - SMc02242 0.37 -0.2 606,497 + SMc02242 0.64 +0.8 606,498 - SMc02242 0.64 +1.8 606,498 - SMc02242 0.64 -0.1 606,501 - SMc02242 0.65 +0.8 606,569 + SMc02242 0.82 -2.5 606,794 - SMc02243 0.30 -3.9 606,913 - SMc02243 0.54 -1.8 606,934 + SMc02243 0.58 -2.3 607,016 - SMc02243 0.74 -1.4 607,016 - SMc02243 0.74 -0.6 607,016 - SMc02243 0.74 +0.6 607,027 + SMc02243 0.76 +0.9 607,120 + -0.2 607,120 + -1.6 607,166 - -0.7 607,181 - +0.7 607,267 + +0.6 607,268 - -1.1 607,268 - -1.0 607,466 + SMc02244 0.20 -1.4 607,467 - SMc02244 0.20 -0.2 607,467 - SMc02244 0.20 +0.2 607,552 + SMc02244 0.26 +0.6 607,552 + SMc02244 0.26 -0.8 607,553 - SMc02244 0.26 +0.4 607,553 - SMc02244 0.26 -0.0 607,553 - SMc02244 0.26 -0.4 607,553 - SMc02244 0.26 +0.8 607,553 - SMc02244 0.26 +0.5 607,554 + SMc02244 0.26 -0.3 607,554 + SMc02244 0.26 +1.2 607,555 - SMc02244 0.26 +0.6 607,628 + SMc02244 0.32 +2.3 607,628 + SMc02244 0.32 -2.6 607,628 + SMc02244 0.32 +0.4 607,629 - SMc02244 0.32 +0.2 607,673 + SMc02244 0.35 +2.2 607,674 - SMc02244 0.35 +0.7 607,865 + SMc02244 0.49 +1.1 607,954 + SMc02244 0.56 -0.8 607,955 - SMc02244 0.56 +0.9 608,079 - SMc02244 0.65 +0.2 608,291 + SMc02244 0.80 -1.1 608,291 + SMc02244 0.80 +0.1 608,291 + SMc02244 0.80 -1.3 608,292 - SMc02244 0.80 +0.3 608,292 - SMc02244 0.80 +1.7 608,292 - SMc02244 0.80 -0.7 608,292 - SMc02244 0.80 -2.4 608,292 - SMc02244 0.80 +0.9 608,292 - SMc02244 0.80 +0.0 608,292 - SMc02244 0.80 +0.6 608,292 - SMc02244 0.80 +1.0 608,293 + SMc02244 0.80 -4.5 608,293 + SMc02244 0.80 -0.9 608,293 + SMc02244 0.80 +2.2 608,294 - SMc02244 0.80 +0.2 608,294 - SMc02244 0.80 -1.8 608,578 + -0.6 608,579 - -0.6 608,678 + SMc02245 0.13 -0.4 608,679 - SMc02245 0.13 +0.3 609,167 + SMc02245 0.58 -3.3 609,167 + SMc02245 0.58 +0.2 609,208 - SMc02245 0.62 +0.9 609,280 - SMc02245 0.68 -1.9
Or see this region's nucleotide sequence