Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02148 and SMc02147 are separated by 213 nucleotides SMc02147 and SMc02146 are separated by 194 nucleotides
SMc02148: SMc02148 - hypothetical protein, at 564,142 to 565,044
SMc02148
SMc02147: SMc02147 - phosphate regulon sensor histidine kinase transmembrane protein, at 565,258 to 566,520
SMc02147
SMc02146: SMc02146 - phosphate-binding periplasmic protein, at 566,715 to 567,749
SMc02146
Position (kb) 565
566
567 Strain fitness (log2 ratio) -6
-5
-4
-3
-2
-1
0
1
2
3 at 564.327 kb on + strand, within SMc02148 at 564.327 kb on + strand, within SMc02148 at 564.327 kb on + strand, within SMc02148 at 564.347 kb on + strand, within SMc02148 at 564.348 kb on - strand, within SMc02148 at 564.591 kb on - strand, within SMc02148 at 564.644 kb on + strand, within SMc02148 at 564.656 kb on + strand, within SMc02148 at 564.656 kb on + strand, within SMc02148 at 564.657 kb on - strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.723 kb on + strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.724 kb on - strand, within SMc02148 at 564.893 kb on + strand, within SMc02148 at 565.089 kb on + strand at 565.089 kb on + strand at 565.089 kb on + strand at 565.138 kb on + strand at 565.272 kb on + strand at 565.614 kb on + strand, within SMc02147 at 565.630 kb on + strand, within SMc02147 at 565.630 kb on + strand, within SMc02147 at 565.630 kb on + strand, within SMc02147 at 565.631 kb on - strand, within SMc02147 at 565.631 kb on - strand, within SMc02147 at 565.631 kb on - strand, within SMc02147 at 565.744 kb on + strand, within SMc02147 at 565.744 kb on + strand, within SMc02147 at 565.745 kb on - strand, within SMc02147 at 565.745 kb on - strand, within SMc02147 at 565.814 kb on - strand, within SMc02147 at 566.337 kb on - strand, within SMc02147 at 566.442 kb on + strand at 566.442 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 564,327 + SMc02148 0.20 +0.1 564,327 + SMc02148 0.20 +0.2 564,327 + SMc02148 0.20 -0.7 564,347 + SMc02148 0.23 +0.3 564,348 - SMc02148 0.23 +0.8 564,591 - SMc02148 0.50 -2.6 564,644 + SMc02148 0.56 +0.1 564,656 + SMc02148 0.57 -1.1 564,656 + SMc02148 0.57 -0.1 564,657 - SMc02148 0.57 +0.2 564,723 + SMc02148 0.64 +2.8 564,723 + SMc02148 0.64 -0.3 564,723 + SMc02148 0.64 +0.1 564,723 + SMc02148 0.64 +0.6 564,724 - SMc02148 0.64 -2.7 564,724 - SMc02148 0.64 -0.2 564,724 - SMc02148 0.64 -0.8 564,724 - SMc02148 0.64 +1.1 564,893 + SMc02148 0.83 -1.5 565,089 + +0.3 565,089 + +0.2 565,089 + -0.1 565,138 + -2.4 565,272 + -2.0 565,614 + SMc02147 0.28 -3.5 565,630 + SMc02147 0.29 -3.4 565,630 + SMc02147 0.29 -3.2 565,630 + SMc02147 0.29 -1.8 565,631 - SMc02147 0.30 -3.3 565,631 - SMc02147 0.30 -5.8 565,631 - SMc02147 0.30 -4.6 565,744 + SMc02147 0.38 -4.2 565,744 + SMc02147 0.38 -3.3 565,745 - SMc02147 0.39 -1.8 565,745 - SMc02147 0.39 +0.2 565,814 - SMc02147 0.44 -3.0 566,337 - SMc02147 0.85 -1.1 566,442 + -3.5 566,442 + -3.4
Or see this region's nucleotide sequence