Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc02145 and SMc02144 overlap by 34 nucleotides SMc02144 and SMc02143 overlap by 4 nucleotides SMc02143 and SMc02142 are separated by 13 nucleotides SMc02142 and SMc02141 are separated by 86 nucleotides
SMc02145: SMc02145 - signal peptide protein, at 567,841 to 568,446
SMc02145
SMc02144: SMc02144 - phosphate ABC transporter permease, at 568,413 to 569,324
SMc02144
SMc02143: SMc02143 - phosphate ABC transporter permease, at 569,321 to 570,643
SMc02143
SMc02142: SMc02142 - phosphate transporter ATP-binding protein, at 570,657 to 571,472
SMc02142
SMc02141: SMc02141 - phosphate transporter PhoU, at 571,559 to 572,272
SMc02141
Position (kb) 569
570
571 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 568.372 kb on - strand, within SMc02145 at 568.627 kb on - strand, within SMc02144 at 568.627 kb on - strand, within SMc02144 at 568.627 kb on - strand, within SMc02144 at 568.627 kb on - strand, within SMc02144 at 568.696 kb on - strand, within SMc02144 at 568.696 kb on - strand, within SMc02144 at 569.280 kb on + strand at 569.280 kb on + strand at 569.280 kb on + strand at 569.280 kb on + strand at 569.346 kb on + strand at 569.502 kb on - strand, within SMc02143 at 569.502 kb on - strand, within SMc02143 at 569.601 kb on - strand, within SMc02143 at 569.603 kb on - strand, within SMc02143 at 569.613 kb on - strand, within SMc02143 at 569.641 kb on - strand, within SMc02143 at 570.000 kb on - strand, within SMc02143 at 570.000 kb on - strand, within SMc02143 at 570.000 kb on - strand, within SMc02143 at 570.057 kb on - strand, within SMc02143 at 570.509 kb on + strand, within SMc02143 at 570.509 kb on + strand, within SMc02143 at 570.510 kb on - strand, within SMc02143 at 570.510 kb on - strand, within SMc02143 at 570.641 kb on + strand at 570.721 kb on - strand at 570.721 kb on - strand at 570.751 kb on - strand, within SMc02142 at 570.753 kb on + strand, within SMc02142 at 570.934 kb on - strand, within SMc02142 at 570.934 kb on - strand, within SMc02142 at 570.934 kb on - strand, within SMc02142 at 570.934 kb on - strand, within SMc02142 at 571.403 kb on + strand at 571.449 kb on + strand at 571.449 kb on + strand at 571.450 kb on - strand at 571.450 kb on - strand at 571.450 kb on - strand at 571.510 kb on + strand at 571.511 kb on - strand at 571.558 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 568,372 - SMc02145 0.88 -0.8 568,627 - SMc02144 0.23 -3.5 568,627 - SMc02144 0.23 -1.1 568,627 - SMc02144 0.23 -3.8 568,627 - SMc02144 0.23 -2.3 568,696 - SMc02144 0.31 -1.4 568,696 - SMc02144 0.31 -2.6 569,280 + +4.4 569,280 + -1.6 569,280 + +1.8 569,280 + -0.4 569,346 + -3.5 569,502 - SMc02143 0.14 -0.9 569,502 - SMc02143 0.14 -2.8 569,601 - SMc02143 0.21 -2.4 569,603 - SMc02143 0.21 +1.2 569,613 - SMc02143 0.22 +1.2 569,641 - SMc02143 0.24 -1.7 570,000 - SMc02143 0.51 -0.8 570,000 - SMc02143 0.51 -3.1 570,000 - SMc02143 0.51 -0.1 570,057 - SMc02143 0.56 -1.1 570,509 + SMc02143 0.90 -0.8 570,509 + SMc02143 0.90 +3.0 570,510 - SMc02143 0.90 -1.1 570,510 - SMc02143 0.90 -2.0 570,641 + -0.2 570,721 - -3.9 570,721 - -3.5 570,751 - SMc02142 0.12 +4.0 570,753 + SMc02142 0.12 -2.6 570,934 - SMc02142 0.34 -1.4 570,934 - SMc02142 0.34 -4.4 570,934 - SMc02142 0.34 -2.4 570,934 - SMc02142 0.34 -2.7 571,403 + -0.1 571,449 + -0.4 571,449 + +0.4 571,450 - -4.1 571,450 - -1.5 571,450 - -2.4 571,510 + +0.4 571,511 - -2.1 571,558 + +0.2
Or see this region's nucleotide sequence