Strain Fitness in Sinorhizobium meliloti 1021 around SMc02037

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc02036 and SMc02037 are separated by 241 nucleotidesSMc02037 and SMc02038 are separated by 35 nucleotides SMc02036: SMc02036 - transcriptional regulator, at 2,742,563 to 2,743,270 SMc02036 SMc02037: SMc02037 - oxidoreductase, at 2,743,512 to 2,744,282 SMc02037 SMc02038: SMc02038 - glycerol dehydrogenase, at 2,744,318 to 2,745,412 SMc02038 Position (kb) 2743 2744 2745Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 2743.004 kb on + strand, within SMc02036at 2743.020 kb on - strand, within SMc02036at 2743.192 kb on + strand, within SMc02036at 2743.194 kb on - strand, within SMc02036at 2743.516 kb on - strandat 2743.698 kb on + strand, within SMc02037at 2743.699 kb on - strand, within SMc02037at 2743.699 kb on - strand, within SMc02037at 2743.898 kb on + strand, within SMc02037at 2743.959 kb on + strand, within SMc02037at 2743.959 kb on + strand, within SMc02037at 2743.960 kb on - strand, within SMc02037at 2743.992 kb on + strand, within SMc02037at 2743.993 kb on - strand, within SMc02037at 2744.088 kb on + strand, within SMc02037at 2744.232 kb on + strandat 2744.233 kb on - strandat 2744.233 kb on - strandat 2744.233 kb on - strandat 2744.233 kb on - strandat 2744.233 kb on - strandat 2744.234 kb on + strandat 2744.234 kb on + strandat 2744.268 kb on + strandat 2744.269 kb on - strandat 2744.269 kb on - strandat 2744.269 kb on - strandat 2744.269 kb on - strandat 2744.269 kb on - strandat 2744.348 kb on + strandat 2744.348 kb on + strandat 2744.348 kb on + strandat 2744.348 kb on + strandat 2744.348 kb on + strandat 2744.349 kb on - strandat 2744.349 kb on - strandat 2744.349 kb on - strandat 2744.349 kb on - strandat 2744.387 kb on + strandat 2744.572 kb on + strand, within SMc02038at 2744.861 kb on - strand, within SMc02038at 2744.882 kb on + strand, within SMc02038at 2744.882 kb on + strand, within SMc02038at 2744.882 kb on + strand, within SMc02038at 2744.883 kb on - strand, within SMc02038at 2744.883 kb on - strand, within SMc02038at 2744.883 kb on - strand, within SMc02038at 2745.125 kb on + strand, within SMc02038at 2745.211 kb on - strand, within SMc02038at 2745.211 kb on - strand, within SMc02038at 2745.211 kb on - strand, within SMc02038

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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2,743,004 + SMc02036 0.62 +1.4
2,743,020 - SMc02036 0.65 +1.1
2,743,192 + SMc02036 0.89 +1.4
2,743,194 - SMc02036 0.89 +3.0
2,743,516 - +0.8
2,743,698 + SMc02037 0.24 -0.4
2,743,699 - SMc02037 0.24 -3.7
2,743,699 - SMc02037 0.24 -1.2
2,743,898 + SMc02037 0.50 +1.3
2,743,959 + SMc02037 0.58 +1.3
2,743,959 + SMc02037 0.58 +0.8
2,743,960 - SMc02037 0.58 -3.1
2,743,992 + SMc02037 0.62 +0.9
2,743,993 - SMc02037 0.62 +0.9
2,744,088 + SMc02037 0.75 -1.9
2,744,232 + -3.7
2,744,233 - -0.6
2,744,233 - -0.5
2,744,233 - +1.2
2,744,233 - -1.7
2,744,233 - +1.1
2,744,234 + -0.0
2,744,234 + +0.1
2,744,268 + +2.3
2,744,269 - +0.9
2,744,269 - -0.5
2,744,269 - +0.5
2,744,269 - +0.1
2,744,269 - +0.3
2,744,348 + -0.5
2,744,348 + +0.2
2,744,348 + -4.4
2,744,348 + +0.4
2,744,348 + -1.4
2,744,349 - +0.2
2,744,349 - -3.4
2,744,349 - +0.4
2,744,349 - -1.5
2,744,387 + +2.3
2,744,572 + SMc02038 0.23 +0.4
2,744,861 - SMc02038 0.50 +0.4
2,744,882 + SMc02038 0.52 -0.6
2,744,882 + SMc02038 0.52 -2.2
2,744,882 + SMc02038 0.52 -1.2
2,744,883 - SMc02038 0.52 -3.6
2,744,883 - SMc02038 0.52 -1.6
2,744,883 - SMc02038 0.52 +1.5
2,745,125 + SMc02038 0.74 +3.4
2,745,211 - SMc02038 0.82 +0.6
2,745,211 - SMc02038 0.82 -1.7
2,745,211 - SMc02038 0.82 +1.0

Or see this region's nucleotide sequence