Strain Fitness in Sinorhizobium meliloti 1021 around SMc01800
Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
1,345,970 | + | SMc01798 | 0.19 | -0.6 | |
1,346,028 | - | SMc01798 | 0.27 | -0.8 | |
1,346,133 | + | SMc01798 | 0.41 | -2.3 | |
1,346,210 | + | SMc01798 | 0.52 | +0.4 | |
1,346,210 | + | SMc01798 | 0.52 | -0.5 | |
1,346,210 | + | SMc01798 | 0.52 | -1.0 | |
1,346,210 | + | SMc01798 | 0.52 | +0.0 | |
1,346,211 | - | SMc01798 | 0.52 | -1.5 | |
1,346,372 | + | SMc01798 | 0.73 | -0.1 | |
1,346,569 | - | -3.6 | |||
1,346,662 | + | SMc01799 | 0.43 | -0.1 | |
1,346,663 | - | SMc01799 | 0.44 | +1.9 | |
1,346,731 | + | SMc01799 | 0.80 | +0.7 | |
1,346,785 | - | -3.5 | |||
1,347,227 | - | SMc01800 | 0.23 | -4.5 | |
1,347,803 | - | SMc01800 | 0.76 | -3.1 | |
1,348,037 | - | +0.0 | |||
1,348,037 | - | -1.0 | |||
1,348,055 | + | +0.4 | |||
1,348,548 | + | SMc01801 | 0.44 | +1.0 | |
1,348,675 | + | SMc01801 | 0.57 | -1.2 | |
1,348,676 | - | SMc01801 | 0.57 | -0.3 |
Or see this region's nucleotide sequence