Strain Fitness in Sinorhizobium meliloti 1021 around SMc01497

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc01499 and SMc01498 are separated by 30 nucleotidesSMc01498 and SMc01497 are separated by 5 nucleotidesSMc01497 and SMc01496 are separated by 189 nucleotides SMc01499: SMc01499 - ATP-binding transport ABC transporter protein, at 2,630,146 to 2,631,147 SMc01499 SMc01498: SMc01498 - sorbitol/mannitol transport inner membrane protein, at 2,631,178 to 2,632,008 SMc01498 SMc01497: SMc01497 - sorbitol/mannitol transport inner membrane transmembrane protein, at 2,632,014 to 2,632,886 SMc01497 SMc01496: SMc01496 - sorbitol-binding periplasmic protein, at 2,633,076 to 2,634,386 SMc01496 Position (kb) 2632 2633Strain fitness (log2 ratio) -2 -1 0 1 2at 2631.082 kb on + strandat 2631.082 kb on + strandat 2631.082 kb on + strandat 2631.082 kb on + strandat 2631.121 kb on + strandat 2631.122 kb on - strandat 2631.153 kb on + strandat 2631.154 kb on - strandat 2631.159 kb on + strandat 2631.180 kb on - strandat 2631.311 kb on + strand, within SMc01498at 2631.449 kb on + strand, within SMc01498at 2631.449 kb on + strand, within SMc01498at 2631.449 kb on + strand, within SMc01498at 2631.450 kb on - strand, within SMc01498at 2631.450 kb on - strand, within SMc01498at 2631.450 kb on - strand, within SMc01498at 2631.530 kb on + strand, within SMc01498at 2631.530 kb on + strand, within SMc01498at 2631.531 kb on - strand, within SMc01498at 2631.571 kb on + strand, within SMc01498at 2631.572 kb on - strand, within SMc01498at 2631.620 kb on - strand, within SMc01498at 2631.620 kb on - strand, within SMc01498at 2631.626 kb on + strand, within SMc01498at 2631.626 kb on + strand, within SMc01498at 2631.833 kb on + strand, within SMc01498at 2631.833 kb on + strand, within SMc01498at 2631.834 kb on - strand, within SMc01498at 2632.282 kb on + strand, within SMc01497at 2632.282 kb on + strand, within SMc01497at 2632.283 kb on - strand, within SMc01497at 2632.297 kb on - strand, within SMc01497at 2632.714 kb on + strand, within SMc01497at 2632.715 kb on - strand, within SMc01497at 2632.720 kb on + strand, within SMc01497at 2632.720 kb on + strand, within SMc01497at 2632.769 kb on - strand, within SMc01497at 2632.769 kb on - strand, within SMc01497at 2632.786 kb on + strand, within SMc01497at 2632.934 kb on - strandat 2633.243 kb on - strand, within SMc01496at 2633.710 kb on + strand, within SMc01496at 2633.711 kb on - strand, within SMc01496at 2633.857 kb on + strand, within SMc01496

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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2,631,082 + +0.9
2,631,082 + +0.7
2,631,082 + +0.1
2,631,082 + -2.5
2,631,121 + -0.1
2,631,122 - +0.1
2,631,153 + +1.3
2,631,154 - -0.1
2,631,159 + -1.2
2,631,180 - -0.1
2,631,311 + SMc01498 0.16 +0.0
2,631,449 + SMc01498 0.33 -0.9
2,631,449 + SMc01498 0.33 -0.8
2,631,449 + SMc01498 0.33 -0.5
2,631,450 - SMc01498 0.33 -0.9
2,631,450 - SMc01498 0.33 -0.8
2,631,450 - SMc01498 0.33 -1.2
2,631,530 + SMc01498 0.42 -0.9
2,631,530 + SMc01498 0.42 -0.3
2,631,531 - SMc01498 0.42 -0.1
2,631,571 + SMc01498 0.47 +0.4
2,631,572 - SMc01498 0.47 +0.5
2,631,620 - SMc01498 0.53 -1.5
2,631,620 - SMc01498 0.53 +0.1
2,631,626 + SMc01498 0.54 +0.0
2,631,626 + SMc01498 0.54 -1.3
2,631,833 + SMc01498 0.79 +0.4
2,631,833 + SMc01498 0.79 -2.3
2,631,834 - SMc01498 0.79 +1.0
2,632,282 + SMc01497 0.31 -0.9
2,632,282 + SMc01497 0.31 +0.9
2,632,283 - SMc01497 0.31 +0.6
2,632,297 - SMc01497 0.32 -0.5
2,632,714 + SMc01497 0.80 +0.3
2,632,715 - SMc01497 0.80 +1.1
2,632,720 + SMc01497 0.81 -1.2
2,632,720 + SMc01497 0.81 +0.8
2,632,769 - SMc01497 0.86 +2.1
2,632,769 - SMc01497 0.86 +1.2
2,632,786 + SMc01497 0.88 +1.1
2,632,934 - +0.1
2,633,243 - SMc01496 0.13 -0.4
2,633,710 + SMc01496 0.48 -1.5
2,633,711 - SMc01496 0.48 -1.2
2,633,857 + SMc01496 0.60 +2.0

Or see this region's nucleotide sequence