Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01499 and SMc01498 are separated by 30 nucleotides SMc01498 and SMc01497 are separated by 5 nucleotides SMc01497 and SMc01496 are separated by 189 nucleotides
SMc01499: SMc01499 - ATP-binding transport ABC transporter protein, at 2,630,146 to 2,631,147
SMc01499
SMc01498: SMc01498 - sorbitol/mannitol transport inner membrane protein, at 2,631,178 to 2,632,008
SMc01498
SMc01497: SMc01497 - sorbitol/mannitol transport inner membrane transmembrane protein, at 2,632,014 to 2,632,886
SMc01497
SMc01496: SMc01496 - sorbitol-binding periplasmic protein, at 2,633,076 to 2,634,386
SMc01496
Position (kb)
2632
2633 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 2631.082 kb on + strand at 2631.082 kb on + strand at 2631.082 kb on + strand at 2631.082 kb on + strand at 2631.121 kb on + strand at 2631.122 kb on - strand at 2631.153 kb on + strand at 2631.154 kb on - strand at 2631.159 kb on + strand at 2631.180 kb on - strand at 2631.311 kb on + strand, within SMc01498 at 2631.449 kb on + strand, within SMc01498 at 2631.449 kb on + strand, within SMc01498 at 2631.449 kb on + strand, within SMc01498 at 2631.450 kb on - strand, within SMc01498 at 2631.450 kb on - strand, within SMc01498 at 2631.450 kb on - strand, within SMc01498 at 2631.530 kb on + strand, within SMc01498 at 2631.530 kb on + strand, within SMc01498 at 2631.531 kb on - strand, within SMc01498 at 2631.571 kb on + strand, within SMc01498 at 2631.572 kb on - strand, within SMc01498 at 2631.620 kb on - strand, within SMc01498 at 2631.620 kb on - strand, within SMc01498 at 2631.626 kb on + strand, within SMc01498 at 2631.626 kb on + strand, within SMc01498 at 2631.833 kb on + strand, within SMc01498 at 2631.833 kb on + strand, within SMc01498 at 2631.834 kb on - strand, within SMc01498 at 2632.282 kb on + strand, within SMc01497 at 2632.282 kb on + strand, within SMc01497 at 2632.283 kb on - strand, within SMc01497 at 2632.297 kb on - strand, within SMc01497 at 2632.714 kb on + strand, within SMc01497 at 2632.715 kb on - strand, within SMc01497 at 2632.720 kb on + strand, within SMc01497 at 2632.720 kb on + strand, within SMc01497 at 2632.769 kb on - strand, within SMc01497 at 2632.769 kb on - strand, within SMc01497 at 2632.786 kb on + strand, within SMc01497 at 2632.934 kb on - strand at 2633.243 kb on - strand, within SMc01496 at 2633.710 kb on + strand, within SMc01496 at 2633.711 kb on - strand, within SMc01496 at 2633.857 kb on + strand, within SMc01496
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 2,631,082 + +0.9 2,631,082 + +0.7 2,631,082 + +0.1 2,631,082 + -2.5 2,631,121 + -0.1 2,631,122 - +0.1 2,631,153 + +1.3 2,631,154 - -0.1 2,631,159 + -1.2 2,631,180 - -0.1 2,631,311 + SMc01498 0.16 +0.0 2,631,449 + SMc01498 0.33 -0.9 2,631,449 + SMc01498 0.33 -0.8 2,631,449 + SMc01498 0.33 -0.5 2,631,450 - SMc01498 0.33 -0.9 2,631,450 - SMc01498 0.33 -0.8 2,631,450 - SMc01498 0.33 -1.2 2,631,530 + SMc01498 0.42 -0.9 2,631,530 + SMc01498 0.42 -0.3 2,631,531 - SMc01498 0.42 -0.1 2,631,571 + SMc01498 0.47 +0.4 2,631,572 - SMc01498 0.47 +0.5 2,631,620 - SMc01498 0.53 -1.5 2,631,620 - SMc01498 0.53 +0.1 2,631,626 + SMc01498 0.54 +0.0 2,631,626 + SMc01498 0.54 -1.3 2,631,833 + SMc01498 0.79 +0.4 2,631,833 + SMc01498 0.79 -2.3 2,631,834 - SMc01498 0.79 +1.0 2,632,282 + SMc01497 0.31 -0.9 2,632,282 + SMc01497 0.31 +0.9 2,632,283 - SMc01497 0.31 +0.6 2,632,297 - SMc01497 0.32 -0.5 2,632,714 + SMc01497 0.80 +0.3 2,632,715 - SMc01497 0.80 +1.1 2,632,720 + SMc01497 0.81 -1.2 2,632,720 + SMc01497 0.81 +0.8 2,632,769 - SMc01497 0.86 +2.1 2,632,769 - SMc01497 0.86 +1.2 2,632,786 + SMc01497 0.88 +1.1 2,632,934 - +0.1 2,633,243 - SMc01496 0.13 -0.4 2,633,710 + SMc01496 0.48 -1.5 2,633,711 - SMc01496 0.48 -1.2 2,633,857 + SMc01496 0.60 +2.0
Or see this region's nucleotide sequence