Strain Fitness in Sinorhizobium meliloti 1021 around SMc01236
Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
1,685,192 | + | -2.6 | |||
1,685,310 | - | +0.5 | |||
1,685,445 | + | +0.6 | |||
1,685,445 | + | -0.4 | |||
1,685,453 | + | -3.5 | |||
1,685,477 | + | -0.4 | |||
1,685,493 | - | +0.5 | |||
1,685,507 | + | -3.2 | |||
1,685,930 | + | SMc01236 | 0.30 | -0.1 | |
1,685,931 | - | SMc01236 | 0.30 | -4.7 | |
1,685,931 | - | SMc01236 | 0.30 | -2.6 | |
1,686,344 | + | SMc01236 | 0.81 | +0.3 | |
1,686,345 | - | SMc01236 | 0.81 | -0.7 | |
1,686,347 | + | SMc01236 | 0.81 | -2.5 | |
1,686,348 | - | SMc01236 | 0.82 | -2.2 | |
1,686,348 | - | SMc01236 | 0.82 | -2.9 | |
1,686,653 | - | -3.5 | |||
1,686,985 | + | SMc01235 | 0.14 | -0.6 | |
1,686,985 | + | SMc01235 | 0.14 | -0.6 | |
1,687,165 | + | SMc01235 | 0.20 | -2.7 | |
1,687,166 | - | SMc01235 | 0.20 | -1.7 | |
1,687,334 | - | SMc01235 | 0.26 | -1.1 | |
1,687,334 | - | SMc01235 | 0.26 | -2.3 | |
1,687,478 | - | SMc01235 | 0.31 | +1.4 |
Or see this region's nucleotide sequence