Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc01217 and SMc01216 are separated by 3 nucleotides SMc01216 and SMc01215 are separated by 128 nucleotides
SMc01217: SMc01217 - transport transmembrane protein, at 1,706,955 to 1,708,424
SMc01217
SMc01216: SMc01216 - hypothetical protein, at 1,708,428 to 1,708,730
SMc01216
SMc01215: SMc01215 - carbamoyl phosphate synthase large subunit, at 1,708,859 to 1,712,350
SMc01215
Position (kb)
1708
1709 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1707.454 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.507 kb on + strand, within SMc01217 at 1707.508 kb on - strand, within SMc01217 at 1707.542 kb on - strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.658 kb on + strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217 at 1707.659 kb on - strand, within SMc01217 at 1707.681 kb on - strand, within SMc01217 at 1707.873 kb on + strand, within SMc01217 at 1707.873 kb on + strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.874 kb on - strand, within SMc01217 at 1707.882 kb on + strand, within SMc01217 at 1707.950 kb on - strand, within SMc01217 at 1708.084 kb on - strand, within SMc01217 at 1708.230 kb on + strand, within SMc01217 at 1708.637 kb on - strand, within SMc01216 at 1708.639 kb on + strand, within SMc01216 at 1708.640 kb on - strand, within SMc01216 at 1708.721 kb on - strand at 1708.723 kb on - strand at 1709.368 kb on + strand, within SMc01215
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 1,707,454 + SMc01217 0.34 -0.3 1,707,507 + SMc01217 0.38 +0.5 1,707,507 + SMc01217 0.38 -2.0 1,707,507 + SMc01217 0.38 +1.9 1,707,508 - SMc01217 0.38 +2.0 1,707,542 - SMc01217 0.40 +0.3 1,707,658 + SMc01217 0.48 +1.1 1,707,658 + SMc01217 0.48 -4.2 1,707,659 - SMc01217 0.48 +0.1 1,707,659 - SMc01217 0.48 -1.1 1,707,681 - SMc01217 0.49 -1.5 1,707,873 + SMc01217 0.62 -0.7 1,707,873 + SMc01217 0.62 -0.3 1,707,874 - SMc01217 0.63 -0.7 1,707,874 - SMc01217 0.63 +0.8 1,707,874 - SMc01217 0.63 -0.4 1,707,882 + SMc01217 0.63 -0.2 1,707,950 - SMc01217 0.68 -2.8 1,708,084 - SMc01217 0.77 +0.7 1,708,230 + SMc01217 0.87 +0.4 1,708,637 - SMc01216 0.69 -3.7 1,708,639 + SMc01216 0.70 -0.9 1,708,640 - SMc01216 0.70 -0.2 1,708,721 - +2.0 1,708,723 - -0.1 1,709,368 + SMc01215 0.15 -2.0
Or see this region's nucleotide sequence