Strain Fitness in Sinorhizobium meliloti 1021 around SMc01206
Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | copper (II) chloride 1 mM |
---|---|---|---|---|---|
remove | |||||
1,721,350 | + | SMc01207 | 0.22 | -3.7 | |
1,721,351 | - | SMc01207 | 0.22 | +0.6 | |
1,721,351 | - | SMc01207 | 0.22 | -1.6 | |
1,721,351 | - | SMc01207 | 0.22 | -2.3 | |
1,721,351 | - | SMc01207 | 0.22 | +0.6 | |
1,722,196 | - | -0.6 | |||
1,722,381 | - | SMc01206 | 0.16 | -3.9 | |
1,722,960 | - | SMc01206 | 0.67 | -1.2 | |
1,723,216 | - | -2.6 | |||
1,723,387 | + | +1.0 | |||
1,723,387 | + | -0.4 | |||
1,723,388 | - | +0.4 | |||
1,723,388 | - | +0.8 | |||
1,723,397 | - | +0.2 | |||
1,723,397 | - | -2.6 | |||
1,723,632 | + | -3.0 | |||
1,723,689 | - | +0.2 | |||
1,723,790 | + | -2.0 | |||
1,723,791 | - | -0.5 | |||
1,723,795 | - | +0.2 | |||
1,723,995 | - | SMc01205 | 0.29 | -1.1 | |
1,724,122 | + | SMc01205 | 0.46 | +0.9 | |
1,724,125 | + | SMc01205 | 0.46 | +0.0 | |
1,724,125 | + | SMc01205 | 0.46 | -2.6 | |
1,724,126 | - | SMc01205 | 0.46 | -0.2 | |
1,724,126 | - | SMc01205 | 0.46 | +0.2 | |
1,724,134 | + | SMc01205 | 0.47 | +0.0 | |
1,724,135 | - | SMc01205 | 0.47 | -4.6 | |
1,724,140 | + | SMc01205 | 0.48 | -1.1 | |
1,724,190 | + | SMc01205 | 0.55 | -3.9 | |
1,724,190 | + | SMc01205 | 0.55 | +0.1 | |
1,724,191 | - | SMc01205 | 0.55 | -1.6 | |
1,724,281 | + | SMc01205 | 0.67 | +1.1 | |
1,724,281 | + | SMc01205 | 0.67 | +0.5 | |
1,724,282 | - | SMc01205 | 0.67 | +0.3 |
Or see this region's nucleotide sequence