Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00990 and SMc00994 are separated by 112 nucleotides SMc00994 and SMc00989 are separated by 370 nucleotides
SMc00990: SMc00990 - fosmidomycin resistance antibiotic resistance transmembrane protein, at 943,608 to 944,804
SMc00990
SMc00994: SMc00994 - transcriptional regulator, at 944,917 to 945,732
SMc00994
SMc00989: SMc00989 - signal peptide protein, at 946,103 to 946,909
SMc00989
Position (kb) 944
945
946 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 944.017 kb on - strand, within SMc00990 at 944.040 kb on + strand, within SMc00990 at 944.040 kb on + strand, within SMc00990 at 944.041 kb on - strand, within SMc00990 at 944.041 kb on - strand, within SMc00990 at 944.080 kb on + strand, within SMc00990 at 944.080 kb on + strand, within SMc00990 at 944.080 kb on + strand, within SMc00990 at 944.081 kb on - strand, within SMc00990 at 944.101 kb on + strand, within SMc00990 at 944.102 kb on - strand, within SMc00990 at 944.102 kb on - strand, within SMc00990 at 944.224 kb on + strand, within SMc00990 at 944.224 kb on + strand, within SMc00990 at 944.224 kb on + strand, within SMc00990 at 944.225 kb on - strand, within SMc00990 at 944.555 kb on - strand, within SMc00990 at 944.625 kb on - strand, within SMc00990 at 944.683 kb on + strand, within SMc00990 at 944.683 kb on + strand, within SMc00990 at 944.723 kb on + strand at 944.723 kb on + strand at 944.723 kb on + strand at 944.723 kb on + strand at 944.724 kb on - strand at 944.856 kb on + strand at 945.028 kb on + strand, within SMc00994 at 945.028 kb on + strand, within SMc00994 at 945.029 kb on - strand, within SMc00994 at 945.111 kb on + strand, within SMc00994 at 945.111 kb on + strand, within SMc00994 at 945.112 kb on - strand, within SMc00994 at 945.112 kb on - strand, within SMc00994 at 945.204 kb on + strand, within SMc00994 at 945.204 kb on + strand, within SMc00994 at 945.204 kb on + strand, within SMc00994 at 945.205 kb on - strand, within SMc00994 at 945.205 kb on - strand, within SMc00994 at 945.217 kb on + strand, within SMc00994 at 945.218 kb on - strand, within SMc00994 at 945.218 kb on - strand, within SMc00994 at 945.395 kb on + strand, within SMc00994 at 945.395 kb on + strand, within SMc00994 at 945.396 kb on - strand, within SMc00994 at 945.709 kb on + strand at 945.710 kb on - strand at 945.761 kb on + strand at 945.762 kb on - strand at 945.762 kb on - strand at 945.802 kb on + strand at 945.802 kb on + strand at 945.857 kb on + strand at 945.920 kb on - strand at 946.202 kb on + strand, within SMc00989 at 946.202 kb on + strand, within SMc00989 at 946.203 kb on - strand, within SMc00989 at 946.213 kb on - strand, within SMc00989 at 946.241 kb on + strand, within SMc00989 at 946.343 kb on + strand, within SMc00989 at 946.344 kb on - strand, within SMc00989 at 946.437 kb on + strand, within SMc00989 at 946.438 kb on - strand, within SMc00989 at 946.518 kb on + strand, within SMc00989 at 946.518 kb on + strand, within SMc00989 at 946.519 kb on - strand, within SMc00989 at 946.528 kb on + strand, within SMc00989 at 946.640 kb on + strand, within SMc00989 at 946.641 kb on - strand, within SMc00989 at 946.652 kb on + strand, within SMc00989 at 946.652 kb on + strand, within SMc00989 at 946.652 kb on + strand, within SMc00989 at 946.652 kb on + strand, within SMc00989 at 946.653 kb on - strand, within SMc00989 at 946.653 kb on - strand, within SMc00989 at 946.655 kb on + strand, within SMc00989 at 946.656 kb on - strand, within SMc00989 at 946.700 kb on + strand, within SMc00989 at 946.700 kb on + strand, within SMc00989 at 946.701 kb on - strand, within SMc00989 at 946.701 kb on - strand, within SMc00989 at 946.701 kb on - strand, within SMc00989 at 946.701 kb on - strand, within SMc00989 at 946.701 kb on - strand, within SMc00989
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 944,017 - SMc00990 0.34 -1.4 944,040 + SMc00990 0.36 -1.8 944,040 + SMc00990 0.36 -0.2 944,041 - SMc00990 0.36 -0.3 944,041 - SMc00990 0.36 +0.7 944,080 + SMc00990 0.39 -0.4 944,080 + SMc00990 0.39 -0.3 944,080 + SMc00990 0.39 +1.7 944,081 - SMc00990 0.40 +0.2 944,101 + SMc00990 0.41 -1.5 944,102 - SMc00990 0.41 -0.2 944,102 - SMc00990 0.41 +0.4 944,224 + SMc00990 0.51 -0.5 944,224 + SMc00990 0.51 +0.4 944,224 + SMc00990 0.51 +0.4 944,225 - SMc00990 0.52 +0.9 944,555 - SMc00990 0.79 -2.1 944,625 - SMc00990 0.85 -1.9 944,683 + SMc00990 0.90 -1.1 944,683 + SMc00990 0.90 +0.8 944,723 + +0.7 944,723 + -1.7 944,723 + -0.0 944,723 + +2.9 944,724 - +1.8 944,856 + -0.2 945,028 + SMc00994 0.14 +0.0 945,028 + SMc00994 0.14 +1.1 945,029 - SMc00994 0.14 +2.0 945,111 + SMc00994 0.24 +1.1 945,111 + SMc00994 0.24 -2.9 945,112 - SMc00994 0.24 -0.3 945,112 - SMc00994 0.24 +0.2 945,204 + SMc00994 0.35 +2.0 945,204 + SMc00994 0.35 -3.0 945,204 + SMc00994 0.35 +0.2 945,205 - SMc00994 0.35 +0.8 945,205 - SMc00994 0.35 -0.1 945,217 + SMc00994 0.37 +0.5 945,218 - SMc00994 0.37 +1.0 945,218 - SMc00994 0.37 -1.1 945,395 + SMc00994 0.59 -0.3 945,395 + SMc00994 0.59 -3.2 945,396 - SMc00994 0.59 +1.1 945,709 + -1.3 945,710 - -0.2 945,761 + +0.8 945,762 - +0.5 945,762 - +0.9 945,802 + +1.1 945,802 + -1.5 945,857 + +1.3 945,920 - +1.5 946,202 + SMc00989 0.12 +1.3 946,202 + SMc00989 0.12 +0.4 946,203 - SMc00989 0.12 +0.1 946,213 - SMc00989 0.14 -0.5 946,241 + SMc00989 0.17 -2.8 946,343 + SMc00989 0.30 -0.3 946,344 - SMc00989 0.30 +0.3 946,437 + SMc00989 0.41 +1.9 946,438 - SMc00989 0.42 -0.9 946,518 + SMc00989 0.51 +0.5 946,518 + SMc00989 0.51 -1.2 946,519 - SMc00989 0.52 -0.5 946,528 + SMc00989 0.53 +0.2 946,640 + SMc00989 0.67 -1.9 946,641 - SMc00989 0.67 +3.1 946,652 + SMc00989 0.68 -0.1 946,652 + SMc00989 0.68 +0.8 946,652 + SMc00989 0.68 -0.2 946,652 + SMc00989 0.68 +1.1 946,653 - SMc00989 0.68 -1.1 946,653 - SMc00989 0.68 -2.1 946,655 + SMc00989 0.68 -0.5 946,656 - SMc00989 0.69 -2.3 946,700 + SMc00989 0.74 +0.5 946,700 + SMc00989 0.74 -1.7 946,701 - SMc00989 0.74 +0.8 946,701 - SMc00989 0.74 -2.6 946,701 - SMc00989 0.74 -0.0 946,701 - SMc00989 0.74 +0.2 946,701 - SMc00989 0.74 +0.4
Or see this region's nucleotide sequence