Strain Fitness in Sinorhizobium meliloti 1021 around SMc00973

Experiment: copper (II) chloride 1 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSMc00974 and SMc00973 overlap by 4 nucleotidesSMc00973 and SMc00972 are separated by 51 nucleotides SMc00974: SMc00974 - RNA methyltransferase, at 965,799 to 967,046 SMc00974 SMc00973: SMc00973 - hypothetical protein, at 967,043 to 967,798 SMc00973 SMc00972: SMc00972 - 1-deoxy-D-xylulose-5-phosphate synthase, at 967,850 to 969,787 SMc00972 Position (kb) 967 968Strain fitness (log2 ratio) -1 0 1at 966.503 kb on + strand, within SMc00974at 966.784 kb on + strand, within SMc00974at 966.785 kb on - strand, within SMc00974at 967.400 kb on - strand, within SMc00973at 967.606 kb on - strand, within SMc00973at 967.606 kb on - strand, within SMc00973at 967.787 kb on - strandat 967.787 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM
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966,503 + SMc00974 0.56 -0.6
966,784 + SMc00974 0.79 +0.8
966,785 - SMc00974 0.79 -0.6
967,400 - SMc00973 0.47 -1.7
967,606 - SMc00973 0.74 -0.1
967,606 - SMc00973 0.74 +0.7
967,787 - +1.5
967,787 - -0.4

Or see this region's nucleotide sequence