Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00918 and SMc00917 overlap by 4 nucleotides SMc00917 and SMc00916 are separated by 119 nucleotides SMc00916 and SMc00915 overlap by 226 nucleotides SMc00915 and SMc00914 are separated by 87 nucleotides
SMc00918: SMc00918 - ATP phosphoribosyltransferase regulatory subunit, at 864,669 to 865,808
SMc00918
SMc00917: SMc00917 - ATP phosphoribosyltransferase (EC 2.4.2.17) <small>(from data)</small>, at 865,805 to 866,500
SMc00917
SMc00916: SMc00916 - glutathione S-transferase, at 866,620 to 867,363
SMc00916
SMc00915: SMc00915 - hypothetical protein, at 867,138 to 867,329
SMc00915
SMc00914: SMc00914 - oxidoreductase, at 867,417 to 868,634
SMc00914
Position (kb) 865
866
867 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 864.888 kb on - strand, within SMc00918 at 864.919 kb on - strand, within SMc00918 at 864.919 kb on - strand, within SMc00918 at 864.924 kb on + strand, within SMc00918 at 864.924 kb on + strand, within SMc00918 at 864.925 kb on - strand, within SMc00918 at 864.925 kb on - strand, within SMc00918 at 864.972 kb on + strand, within SMc00918 at 864.972 kb on + strand, within SMc00918 at 865.369 kb on + strand, within SMc00918 at 865.370 kb on - strand, within SMc00918 at 865.629 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.632 kb on + strand, within SMc00918 at 865.633 kb on - strand, within SMc00918 at 865.633 kb on - strand, within SMc00918 at 865.736 kb on + strand at 865.737 kb on - strand at 865.955 kb on + strand, within SMc00917 at 865.955 kb on + strand, within SMc00917 at 866.129 kb on + strand, within SMc00917 at 866.130 kb on - strand, within SMc00917 at 866.217 kb on - strand, within SMc00917 at 866.217 kb on - strand, within SMc00917 at 866.452 kb on + strand at 866.452 kb on + strand at 866.569 kb on + strand at 866.569 kb on + strand at 866.606 kb on + strand at 866.689 kb on + strand at 866.689 kb on + strand at 866.753 kb on - strand, within SMc00916 at 866.753 kb on - strand, within SMc00916 at 866.905 kb on + strand, within SMc00916 at 866.905 kb on + strand, within SMc00916 at 866.906 kb on - strand, within SMc00916 at 866.906 kb on - strand, within SMc00916 at 866.957 kb on - strand, within SMc00916 at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.159 kb on + strand at 867.160 kb on - strand at 867.160 kb on - strand at 867.183 kb on + strand at 867.213 kb on + strand at 867.214 kb on - strand at 867.214 kb on - strand at 867.237 kb on + strand at 867.238 kb on - strand at 867.238 kb on - strand at 867.238 kb on - strand at 867.239 kb on + strand at 867.240 kb on - strand at 867.240 kb on - strand at 867.240 kb on - strand at 867.327 kb on + strand at 867.328 kb on - strand at 867.328 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 864,888 - SMc00918 0.19 -4.4 864,919 - SMc00918 0.22 -4.3 864,919 - SMc00918 0.22 -3.2 864,924 + SMc00918 0.22 -3.5 864,924 + SMc00918 0.22 -1.0 864,925 - SMc00918 0.22 -2.1 864,925 - SMc00918 0.22 +0.2 864,972 + SMc00918 0.27 -2.9 864,972 + SMc00918 0.27 -0.7 865,369 + SMc00918 0.61 +2.4 865,370 - SMc00918 0.61 -1.7 865,629 + SMc00918 0.84 -1.4 865,632 + SMc00918 0.84 +0.1 865,632 + SMc00918 0.84 -1.4 865,632 + SMc00918 0.84 -3.2 865,633 - SMc00918 0.85 +1.0 865,633 - SMc00918 0.85 -2.2 865,736 + -2.6 865,737 - -1.3 865,955 + SMc00917 0.22 -3.3 865,955 + SMc00917 0.22 -2.7 866,129 + SMc00917 0.47 -4.6 866,130 - SMc00917 0.47 -2.3 866,217 - SMc00917 0.59 -1.6 866,217 - SMc00917 0.59 +0.6 866,452 + -2.1 866,452 + -2.9 866,569 + +0.3 866,569 + +1.7 866,606 + -2.9 866,689 + -0.5 866,689 + +0.4 866,753 - SMc00916 0.18 +0.5 866,753 - SMc00916 0.18 -4.3 866,905 + SMc00916 0.38 +0.1 866,905 + SMc00916 0.38 -2.2 866,906 - SMc00916 0.38 +0.1 866,906 - SMc00916 0.38 -0.3 866,957 - SMc00916 0.45 -0.7 867,159 + +0.2 867,159 + +0.1 867,159 + -0.8 867,159 + -0.2 867,159 + -1.7 867,159 + -0.4 867,159 + +0.5 867,160 - -0.4 867,160 - -4.1 867,183 + +0.0 867,213 + +2.5 867,214 - -3.5 867,214 - -0.1 867,237 + -2.3 867,238 - -0.4 867,238 - +1.3 867,238 - +0.5 867,239 + +1.3 867,240 - -1.0 867,240 - +0.4 867,240 - +0.6 867,327 + +0.3 867,328 - -2.7 867,328 - +0.3
Or see this region's nucleotide sequence