Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00864 and SMc00863 are separated by 454 nucleotides SMc00863 and SMc00862 are separated by 7 nucleotides SMc00862 and SMc00861 are separated by 7 nucleotides
SMc00864: SMc00864 - hypothetical protein, at 922,416 to 923,495
SMc00864
SMc00863: SMc00863 - molybdenum cofactor biosynthesis protein B, at 923,950 to 924,492
SMc00863
SMc00862: SMc00862 - 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase, at 924,500 to 925,405
SMc00862
SMc00861: SMc00861 - signal peptide protein, at 925,413 to 927,242
SMc00861
Position (kb) 923
924
925 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 923.074 kb on + strand, within SMc00864 at 923.074 kb on + strand, within SMc00864 at 923.177 kb on - strand, within SMc00864 at 923.186 kb on + strand, within SMc00864 at 923.187 kb on - strand, within SMc00864 at 923.420 kb on - strand at 923.420 kb on - strand at 923.506 kb on + strand at 923.640 kb on + strand at 923.793 kb on + strand at 923.793 kb on + strand at 923.793 kb on + strand at 923.854 kb on - strand at 924.017 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.314 kb on + strand, within SMc00863 at 924.377 kb on - strand, within SMc00863
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 923,074 + SMc00864 0.61 +0.8 923,074 + SMc00864 0.61 -3.6 923,177 - SMc00864 0.70 +0.9 923,186 + SMc00864 0.71 +0.0 923,187 - SMc00864 0.71 -0.5 923,420 - -4.1 923,420 - -0.2 923,506 + -0.5 923,640 + +0.5 923,793 + -2.3 923,793 + -0.2 923,793 + +0.0 923,854 - +0.2 924,017 + SMc00863 0.12 -0.5 924,314 + SMc00863 0.67 -0.4 924,314 + SMc00863 0.67 +0.7 924,314 + SMc00863 0.67 +0.0 924,314 + SMc00863 0.67 -2.4 924,377 - SMc00863 0.79 -0.2
Or see this region's nucleotide sequence