Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00430 and SMc00431 are separated by 4 nucleotides SMc00431 and SMc00432 are separated by 76 nucleotides SMc00432 and SMc00433 are separated by 154 nucleotides
SMc00430: SMc00430 - oxidoreductase, at 378,451 to 379,434
SMc00430
SMc00431: SMc00431 - hypothetical protein, at 379,439 to 379,843
SMc00431
SMc00432: SMc00432 - 5-deoxy-D-glucuronate isomerase (EC 5.3.1.30) <small>(from data)</small>, at 379,920 to 380,720
SMc00432
SMc00433: SMc00433 - Myo-inosose-2 dehydratase (EC 4.2.1.44) <small>(from data)</small>, at 380,875 to 381,777
SMc00433
Position (kb) 379
380
381 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 379.217 kb on - strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.261 kb on + strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.262 kb on - strand, within SMc00430 at 379.390 kb on + strand at 379.391 kb on - strand at 379.407 kb on + strand at 379.542 kb on - strand, within SMc00431 at 379.665 kb on + strand, within SMc00431 at 379.666 kb on - strand, within SMc00431 at 379.875 kb on + strand at 379.876 kb on - strand at 379.876 kb on - strand at 380.002 kb on + strand, within SMc00432 at 380.003 kb on - strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.005 kb on + strand, within SMc00432 at 380.006 kb on - strand, within SMc00432 at 380.041 kb on + strand, within SMc00432 at 380.042 kb on - strand, within SMc00432 at 380.061 kb on + strand, within SMc00432 at 380.062 kb on - strand, within SMc00432 at 380.113 kb on + strand, within SMc00432 at 380.158 kb on + strand, within SMc00432 at 380.158 kb on + strand at 380.158 kb on + strand, within SMc00432 at 380.158 kb on + strand, within SMc00432 at 380.159 kb on - strand, within SMc00432 at 380.161 kb on + strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.162 kb on - strand, within SMc00432 at 380.176 kb on + strand, within SMc00432 at 380.176 kb on + strand, within SMc00432 at 380.311 kb on + strand, within SMc00432 at 380.312 kb on - strand, within SMc00432 at 380.312 kb on - strand, within SMc00432 at 380.464 kb on + strand, within SMc00432 at 380.464 kb on + strand, within SMc00432 at 380.465 kb on - strand, within SMc00432 at 380.642 kb on - strand at 380.642 kb on - strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.722 kb on + strand at 380.723 kb on - strand at 380.723 kb on - strand at 380.723 kb on - strand at 380.820 kb on + strand at 380.821 kb on - strand at 380.876 kb on + strand at 380.877 kb on - strand at 380.877 kb on - strand at 380.877 kb on - strand at 381.000 kb on - strand, within SMc00433 at 381.177 kb on + strand, within SMc00433 at 381.180 kb on - strand, within SMc00433 at 381.180 kb on - strand, within SMc00433 at 381.180 kb on - strand, within SMc00433 at 381.600 kb on - strand, within SMc00433 at 381.600 kb on - strand, within SMc00433 at 381.600 kb on - strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.645 kb on + strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433 at 381.646 kb on - strand, within SMc00433
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 379,217 - SMc00430 0.78 +0.0 379,261 + SMc00430 0.82 -1.1 379,261 + SMc00430 0.82 -1.5 379,261 + SMc00430 0.82 -2.1 379,261 + SMc00430 0.82 +0.2 379,261 + SMc00430 0.82 +0.0 379,262 - SMc00430 0.82 +0.7 379,262 - SMc00430 0.82 +0.7 379,262 - SMc00430 0.82 -0.8 379,390 + -0.2 379,391 - -1.0 379,407 + +0.5 379,542 - SMc00431 0.25 +1.0 379,665 + SMc00431 0.56 +0.5 379,666 - SMc00431 0.56 -0.6 379,875 + +0.4 379,876 - +0.0 379,876 - +0.9 380,002 + SMc00432 0.10 -0.4 380,003 - SMc00432 0.10 +1.5 380,005 + SMc00432 0.11 -2.7 380,005 + SMc00432 0.11 -0.4 380,005 + SMc00432 0.11 +0.6 380,006 - SMc00432 0.11 +1.2 380,041 + SMc00432 0.15 -2.1 380,042 - SMc00432 0.15 -0.3 380,061 + SMc00432 0.18 +0.5 380,062 - SMc00432 0.18 +0.6 380,113 + SMc00432 0.24 -2.7 380,158 + SMc00432 0.30 -0.7 380,158 + +0.2 380,158 + SMc00432 0.30 +1.2 380,158 + SMc00432 0.30 -0.9 380,159 - SMc00432 0.30 -3.7 380,161 + SMc00432 0.30 -0.2 380,162 - SMc00432 0.30 -0.8 380,162 - SMc00432 0.30 -0.4 380,162 - SMc00432 0.30 -1.2 380,162 - SMc00432 0.30 -0.2 380,162 - SMc00432 0.30 +0.9 380,176 + SMc00432 0.32 +1.2 380,176 + SMc00432 0.32 +1.0 380,311 + SMc00432 0.49 +2.2 380,312 - SMc00432 0.49 +1.3 380,312 - SMc00432 0.49 +0.4 380,464 + SMc00432 0.68 +0.2 380,464 + SMc00432 0.68 +0.6 380,465 - SMc00432 0.68 +0.5 380,642 - -0.3 380,642 - -1.8 380,722 + -2.8 380,722 + +0.7 380,722 + +1.2 380,722 + +2.3 380,722 + -0.6 380,722 + +0.4 380,722 + +1.7 380,723 - +1.3 380,723 - +1.0 380,723 - +0.4 380,820 + +0.5 380,821 - +1.1 380,876 + -0.4 380,877 - +1.2 380,877 - -0.4 380,877 - +1.9 381,000 - SMc00433 0.14 +0.5 381,177 + SMc00433 0.33 -3.8 381,180 - SMc00433 0.34 -2.7 381,180 - SMc00433 0.34 -0.3 381,180 - SMc00433 0.34 -1.4 381,600 - SMc00433 0.80 -0.4 381,600 - SMc00433 0.80 -0.5 381,600 - SMc00433 0.80 -0.5 381,645 + SMc00433 0.85 -1.4 381,645 + SMc00433 0.85 -0.5 381,645 + SMc00433 0.85 +0.6 381,645 + SMc00433 0.85 +1.0 381,645 + SMc00433 0.85 -0.2 381,645 + SMc00433 0.85 +0.9 381,646 - SMc00433 0.85 +2.7 381,646 - SMc00433 0.85 -0.0 381,646 - SMc00433 0.85 +0.5 381,646 - SMc00433 0.85 -2.3 381,646 - SMc00433 0.85 +0.9 381,646 - SMc00433 0.85 -0.6
Or see this region's nucleotide sequence