Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMc00378 and SMc00379 overlap by 1 nucleotides SMc00379 and SMc00380 are separated by 8 nucleotides SMc00380 and SMc00381 are separated by 113 nucleotides
SMc00378: SMc00378 - exodeoxyribonuclease VII large subunit, at 331,801 to 333,381
SMc00378
SMc00379: SMc00379 - oxidoreductase, at 333,381 to 333,971
SMc00379
SMc00380: SMc00380 - transcriptional regulator, at 333,980 to 334,474
SMc00380
SMc00381: SMc00381 - hypothetical protein, at 334,588 to 335,460
SMc00381
Position (kb) 333
334 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 333.163 kb on + strand, within SMc00378 at 333.164 kb on - strand, within SMc00378 at 333.387 kb on - strand at 333.476 kb on + strand at 333.476 kb on + strand, within SMc00379 at 333.547 kb on - strand, within SMc00379 at 333.547 kb on - strand, within SMc00379 at 333.561 kb on + strand, within SMc00379 at 333.758 kb on - strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.807 kb on + strand, within SMc00379 at 333.936 kb on - strand at 334.463 kb on - strand at 334.514 kb on - strand at 334.556 kb on + strand at 334.594 kb on - strand at 334.637 kb on + strand at 334.637 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.647 kb on + strand at 334.648 kb on - strand at 334.651 kb on + strand at 334.651 kb on + strand at 334.651 kb on + strand at 334.652 kb on - strand at 334.832 kb on + strand, within SMc00381 at 334.859 kb on + strand, within SMc00381 at 334.860 kb on - strand, within SMc00381 at 334.860 kb on - strand, within SMc00381
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 333,163 + SMc00378 0.86 -0.1 333,164 - SMc00378 0.86 +1.0 333,387 - -0.4 333,476 + +1.2 333,476 + SMc00379 0.16 +0.2 333,547 - SMc00379 0.28 -1.4 333,547 - SMc00379 0.28 -2.6 333,561 + SMc00379 0.30 -2.6 333,758 - SMc00379 0.64 -2.9 333,807 + SMc00379 0.72 +0.6 333,807 + SMc00379 0.72 -0.6 333,807 + SMc00379 0.72 -2.4 333,807 + SMc00379 0.72 -0.1 333,936 - +0.9 334,463 - +0.2 334,514 - -0.9 334,556 + +0.0 334,594 - -0.9 334,637 + +0.8 334,637 + +0.5 334,647 + +0.3 334,647 + +1.4 334,647 + -0.1 334,647 + -3.8 334,648 - +0.2 334,651 + +1.3 334,651 + +1.2 334,651 + -1.0 334,652 - -0.7 334,832 + SMc00381 0.28 -0.6 334,859 + SMc00381 0.31 -0.9 334,860 - SMc00381 0.31 +0.7 334,860 - SMc00381 0.31 +0.2
Or see this region's nucleotide sequence