Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0564 and SMa5026 are separated by 83 nucleotides SMa5026 and SMa0567 are separated by 153 nucleotides SMa0567 and SMa0570 are separated by 115 nucleotides
SMa0564: SMa0564 - dehydrogenase, at 299,384 to 300,487
SMa0564
SMa5026: SMa5026 - hypothetical protein, at 300,571 to 301,050
SMa5026
SMa0567: SMa0567 - hypothetical protein, at 301,204 to 301,761
SMa0567
SMa0570: SMa0570 - CyaF4 adenylate cyclase, at 301,877 to 303,766
SMa0570
Position (kb) 300
301
302 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 299.765 kb on + strand at 299.766 kb on - strand, within SMa0564 at 299.772 kb on - strand, within SMa0564 at 299.772 kb on - strand, within SMa0564 at 299.877 kb on + strand, within SMa0564 at 299.878 kb on - strand, within SMa0564 at 299.879 kb on + strand, within SMa0564 at 299.879 kb on + strand, within SMa0564 at 299.880 kb on - strand, within SMa0564 at 299.880 kb on - strand, within SMa0564 at 299.921 kb on + strand, within SMa0564 at 299.921 kb on + strand, within SMa0564 at 299.921 kb on + strand, within SMa0564 at 299.922 kb on - strand, within SMa0564 at 299.922 kb on - strand, within SMa0564 at 300.050 kb on + strand, within SMa0564 at 300.051 kb on - strand, within SMa0564 at 300.211 kb on + strand, within SMa0564 at 300.265 kb on - strand, within SMa0564 at 300.547 kb on - strand at 300.547 kb on - strand at 300.549 kb on + strand at 300.549 kb on + strand at 300.674 kb on + strand, within SMa5026 at 300.761 kb on + strand, within SMa5026 at 300.762 kb on - strand, within SMa5026 at 300.762 kb on - strand, within SMa5026 at 300.906 kb on - strand, within SMa5026 at 300.968 kb on - strand, within SMa5026 at 301.084 kb on - strand at 301.154 kb on + strand at 301.155 kb on - strand at 301.230 kb on + strand at 301.258 kb on + strand at 301.259 kb on - strand at 301.263 kb on - strand, within SMa0567 at 301.280 kb on - strand, within SMa0567 at 301.487 kb on + strand, within SMa0567 at 301.488 kb on - strand, within SMa0567 at 301.496 kb on + strand, within SMa0567 at 301.496 kb on + strand, within SMa0567 at 301.497 kb on - strand, within SMa0567 at 301.497 kb on - strand, within SMa0567 at 301.497 kb on - strand, within SMa0567 at 301.567 kb on - strand, within SMa0567 at 301.840 kb on - strand at 301.843 kb on + strand at 301.844 kb on - strand at 301.859 kb on + strand at 301.862 kb on + strand at 301.862 kb on + strand at 301.863 kb on - strand at 301.972 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 299,765 + +0.0 299,766 - SMa0564 0.35 +0.4 299,772 - SMa0564 0.35 +2.4 299,772 - SMa0564 0.35 +1.4 299,877 + SMa0564 0.45 -0.7 299,878 - SMa0564 0.45 +0.6 299,879 + SMa0564 0.45 +0.0 299,879 + SMa0564 0.45 +1.8 299,880 - SMa0564 0.45 +0.7 299,880 - SMa0564 0.45 +0.2 299,921 + SMa0564 0.49 +0.0 299,921 + SMa0564 0.49 -2.6 299,921 + SMa0564 0.49 -1.8 299,922 - SMa0564 0.49 -0.2 299,922 - SMa0564 0.49 -0.4 300,050 + SMa0564 0.60 -0.9 300,051 - SMa0564 0.60 +1.0 300,211 + SMa0564 0.75 +1.7 300,265 - SMa0564 0.80 -0.2 300,547 - -1.0 300,547 - -1.3 300,549 + +0.2 300,549 + +0.8 300,674 + SMa5026 0.21 -1.3 300,761 + SMa5026 0.40 +1.0 300,762 - SMa5026 0.40 -0.5 300,762 - SMa5026 0.40 -0.4 300,906 - SMa5026 0.70 -3.3 300,968 - SMa5026 0.83 -1.8 301,084 - -0.7 301,154 + +0.4 301,155 - -1.4 301,230 + -0.6 301,258 + -4.1 301,259 - -0.5 301,263 - SMa0567 0.11 -0.7 301,280 - SMa0567 0.14 +1.0 301,487 + SMa0567 0.51 -0.2 301,488 - SMa0567 0.51 -0.5 301,496 + SMa0567 0.52 -0.1 301,496 + SMa0567 0.52 -2.7 301,497 - SMa0567 0.53 +0.3 301,497 - SMa0567 0.53 -1.6 301,497 - SMa0567 0.53 -0.1 301,567 - SMa0567 0.65 -4.0 301,840 - -0.5 301,843 + +0.7 301,844 - -2.0 301,859 + +0.7 301,862 + -1.2 301,862 + -1.8 301,863 - +2.0 301,972 + +2.0
Or see this region's nucleotide sequence