Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1672 and SMa1674 are separated by 96 nucleotides SMa1674 and SMa1675 overlap by 2 nucleotides SMa1675 and SMa1676 are separated by 60 nucleotides
SMa1672: SMa1672 - hypothetical protein, at 938,402 to 938,896
SMa1672
SMa1674: SMa1674 - hypothetical protein, at 938,993 to 939,304
SMa1674
SMa1675: SMa1675 - hypothetical protein, at 939,303 to 939,953
SMa1675
SMa1676: SMa1676 - hypothetical protein, at 940,014 to 941,072
SMa1676
Position (kb) 939
940 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3
4 at 938.565 kb on + strand, within SMa1672 at 938.619 kb on + strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.620 kb on - strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.800 kb on + strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.801 kb on - strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.802 kb on + strand, within SMa1672 at 938.803 kb on - strand, within SMa1672 at 938.995 kb on - strand at 939.016 kb on + strand at 939.017 kb on - strand at 939.081 kb on + strand, within SMa1674 at 939.082 kb on - strand, within SMa1674 at 939.103 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.267 kb on - strand, within SMa1674 at 939.269 kb on + strand, within SMa1674 at 939.497 kb on - strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.498 kb on + strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.499 kb on - strand, within SMa1675 at 939.556 kb on + strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.557 kb on - strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.558 kb on + strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.559 kb on - strand, within SMa1675 at 939.560 kb on + strand, within SMa1675 at 939.561 kb on - strand, within SMa1675 at 939.644 kb on + strand, within SMa1675 at 939.984 kb on + strand at 939.985 kb on - strand at 939.985 kb on - strand at 940.166 kb on - strand, within SMa1676 at 940.244 kb on - strand, within SMa1676 at 940.375 kb on + strand, within SMa1676 at 940.375 kb on + strand, within SMa1676 at 940.375 kb on + strand, within SMa1676 at 940.375 kb on + strand at 940.375 kb on + strand, within SMa1676 at 940.376 kb on - strand, within SMa1676 at 940.376 kb on - strand, within SMa1676 at 940.493 kb on - strand, within SMa1676 at 940.615 kb on + strand, within SMa1676 at 940.615 kb on + strand, within SMa1676 at 940.615 kb on + strand, within SMa1676 at 940.616 kb on - strand, within SMa1676 at 940.652 kb on + strand, within SMa1676 at 940.653 kb on - strand, within SMa1676 at 940.680 kb on - strand, within SMa1676 at 940.769 kb on - strand, within SMa1676 at 940.769 kb on - strand, within SMa1676 at 940.833 kb on + strand, within SMa1676 at 940.833 kb on + strand, within SMa1676 at 940.834 kb on - strand, within SMa1676 at 940.898 kb on - strand, within SMa1676 at 940.910 kb on + strand, within SMa1676 at 940.952 kb on + strand, within SMa1676 at 940.953 kb on - strand, within SMa1676
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 938,565 + SMa1672 0.33 -1.2 938,619 + SMa1672 0.44 -0.5 938,620 - SMa1672 0.44 -0.4 938,620 - SMa1672 0.44 +1.2 938,800 + SMa1672 0.80 -3.3 938,800 + SMa1672 0.80 -3.1 938,801 - SMa1672 0.81 -0.2 938,801 - SMa1672 0.81 -1.9 938,802 + SMa1672 0.81 -0.1 938,802 + SMa1672 0.81 -1.6 938,802 + SMa1672 0.81 +0.1 938,802 + SMa1672 0.81 -1.0 938,802 + SMa1672 0.81 -0.0 938,803 - SMa1672 0.81 -2.6 938,995 - +4.5 939,016 + -4.9 939,017 - +0.6 939,081 + SMa1674 0.28 +0.1 939,082 - SMa1674 0.29 +0.1 939,103 - SMa1674 0.35 -2.0 939,267 - SMa1674 0.88 -1.4 939,267 - SMa1674 0.88 -3.5 939,267 - SMa1674 0.88 -0.1 939,267 - SMa1674 0.88 +1.0 939,269 + SMa1674 0.88 +1.0 939,497 - SMa1675 0.30 -0.8 939,498 + SMa1675 0.30 -0.9 939,498 + SMa1675 0.30 +0.9 939,499 - SMa1675 0.30 -2.0 939,499 - SMa1675 0.30 -0.2 939,556 + SMa1675 0.39 +0.3 939,557 - SMa1675 0.39 +1.2 939,557 - SMa1675 0.39 +0.1 939,557 - SMa1675 0.39 -2.0 939,558 + SMa1675 0.39 -1.8 939,558 + SMa1675 0.39 -0.8 939,559 - SMa1675 0.39 +1.2 939,559 - SMa1675 0.39 +1.7 939,560 + SMa1675 0.39 +1.5 939,561 - SMa1675 0.40 +0.3 939,644 + SMa1675 0.52 -0.1 939,984 + +0.2 939,985 - -3.7 939,985 - +2.4 940,166 - SMa1676 0.14 +1.7 940,244 - SMa1676 0.22 -1.1 940,375 + SMa1676 0.34 -2.3 940,375 + SMa1676 0.34 -1.8 940,375 + SMa1676 0.34 -3.2 940,375 + +0.0 940,375 + SMa1676 0.34 +0.9 940,376 - SMa1676 0.34 -0.0 940,376 - SMa1676 0.34 -1.0 940,493 - SMa1676 0.45 -3.7 940,615 + SMa1676 0.57 -1.4 940,615 + SMa1676 0.57 +0.2 940,615 + SMa1676 0.57 -1.1 940,616 - SMa1676 0.57 +0.6 940,652 + SMa1676 0.60 +0.6 940,653 - SMa1676 0.60 -0.1 940,680 - SMa1676 0.63 -0.3 940,769 - SMa1676 0.71 +0.2 940,769 - SMa1676 0.71 +0.9 940,833 + SMa1676 0.77 -0.5 940,833 + SMa1676 0.77 -0.1 940,834 - SMa1676 0.77 +1.1 940,898 - SMa1676 0.83 -0.1 940,910 + SMa1676 0.85 +1.1 940,952 + SMa1676 0.89 -0.1 940,953 - SMa1676 0.89 -0.3
Or see this region's nucleotide sequence