Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1657 and SMa1658 are separated by 4 nucleotides SMa1658 and SMa1660 are separated by 245 nucleotides SMa1660 and SMa1662 are separated by 436 nucleotides
SMa1657: SMa1657 - hypothetical protein, at 925,848 to 926,255
SMa1657
SMa1658: SMa1658 - hypothetical protein, at 926,260 to 926,625
SMa1658
SMa1660: SMa1660 - hypothetical protein, at 926,871 to 927,455
SMa1660
SMa1662: SMa1662 - Cation/multidrug efflux pump, at 927,892 to 931,026
SMa1662
Position (kb) 926
927
928 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 925.959 kb on + strand, within SMa1657 at 926.004 kb on - strand, within SMa1657 at 926.009 kb on + strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.037 kb on + strand, within SMa1657 at 926.053 kb on + strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.234 kb on - strand at 926.262 kb on - strand at 926.269 kb on + strand at 926.544 kb on + strand, within SMa1658 at 926.569 kb on + strand, within SMa1658 at 926.585 kb on - strand, within SMa1658 at 926.614 kb on + strand at 926.735 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.753 kb on - strand at 926.764 kb on + strand at 926.765 kb on - strand at 926.765 kb on - strand at 926.765 kb on - strand at 926.852 kb on + strand at 926.886 kb on + strand at 927.098 kb on - strand, within SMa1660 at 927.098 kb on - strand, within SMa1660 at 927.121 kb on + strand, within SMa1660 at 927.253 kb on + strand, within SMa1660 at 927.335 kb on - strand, within SMa1660 at 927.335 kb on - strand, within SMa1660 at 927.368 kb on + strand, within SMa1660 at 927.431 kb on + strand at 927.471 kb on + strand at 927.509 kb on - strand at 927.614 kb on + strand at 927.615 kb on - strand at 927.615 kb on - strand at 927.673 kb on + strand at 927.679 kb on + strand at 927.679 kb on + strand at 927.680 kb on - strand at 927.680 kb on - strand at 927.756 kb on + strand at 927.761 kb on + strand at 927.762 kb on - strand at 927.848 kb on - strand at 927.848 kb on - strand at 927.848 kb on - strand at 927.966 kb on - strand at 928.118 kb on - strand at 928.241 kb on - strand, within SMa1662 at 928.241 kb on - strand, within SMa1662 at 928.262 kb on + strand, within SMa1662 at 928.263 kb on - strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.264 kb on + strand, within SMa1662 at 928.265 kb on - strand, within SMa1662 at 928.364 kb on + strand, within SMa1662 at 928.385 kb on + strand, within SMa1662
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 925,959 + SMa1657 0.27 -3.1 926,004 - SMa1657 0.38 +0.3 926,009 + SMa1657 0.39 -2.1 926,010 - SMa1657 0.40 -1.1 926,010 - SMa1657 0.40 +0.3 926,010 - SMa1657 0.40 -2.5 926,037 + SMa1657 0.46 -0.8 926,053 + SMa1657 0.50 -2.1 926,136 - SMa1657 0.71 +0.4 926,136 - SMa1657 0.71 -0.5 926,234 - -3.1 926,262 - +1.0 926,269 + +1.8 926,544 + SMa1658 0.78 -3.6 926,569 + SMa1658 0.84 -0.2 926,585 - SMa1658 0.89 +0.6 926,614 + -1.1 926,735 + +1.9 926,752 + +0.2 926,752 + -2.6 926,752 + +0.1 926,752 + +0.5 926,753 - -0.1 926,764 + +1.1 926,765 - -2.0 926,765 - +1.2 926,765 - -2.4 926,852 + +0.4 926,886 + +0.9 927,098 - SMa1660 0.39 -0.0 927,098 - SMa1660 0.39 +1.7 927,121 + SMa1660 0.43 -0.0 927,253 + SMa1660 0.65 +0.2 927,335 - SMa1660 0.79 +3.4 927,335 - SMa1660 0.79 +0.2 927,368 + SMa1660 0.85 +2.0 927,431 + +1.6 927,471 + -4.5 927,509 - -1.1 927,614 + -1.2 927,615 - +0.6 927,615 - -0.9 927,673 + +0.1 927,679 + +0.0 927,679 + +1.2 927,680 - +0.7 927,680 - -0.4 927,756 + -0.2 927,761 + -1.6 927,762 - +0.1 927,848 - +0.1 927,848 - +0.1 927,848 - -0.8 927,966 - -3.3 928,118 - -1.3 928,241 - SMa1662 0.11 -0.6 928,241 - SMa1662 0.11 -1.1 928,262 + SMa1662 0.12 -3.1 928,263 - SMa1662 0.12 +1.8 928,264 + SMa1662 0.12 +1.0 928,264 + SMa1662 0.12 -0.1 928,264 + SMa1662 0.12 +2.3 928,265 - SMa1662 0.12 -0.8 928,364 + SMa1662 0.15 -0.3 928,385 + SMa1662 0.16 +0.9
Or see this region's nucleotide sequence