Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1654 and SMa1657 are separated by 408 nucleotides SMa1657 and SMa1658 are separated by 4 nucleotides SMa1658 and SMa1660 are separated by 245 nucleotides
SMa1654: SMa1654 - GntR family transcriptional regulator, at 924,741 to 925,439
SMa1654
SMa1657: SMa1657 - hypothetical protein, at 925,848 to 926,255
SMa1657
SMa1658: SMa1658 - hypothetical protein, at 926,260 to 926,625
SMa1658
SMa1660: SMa1660 - hypothetical protein, at 926,871 to 927,455
SMa1660
Position (kb) 925
926
927 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 924.873 kb on + strand, within SMa1654 at 925.013 kb on - strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.162 kb on + strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.188 kb on - strand, within SMa1654 at 925.498 kb on + strand at 925.691 kb on + strand at 925.691 kb on + strand at 925.707 kb on + strand at 925.708 kb on - strand at 925.711 kb on + strand at 925.813 kb on - strand at 925.813 kb on - strand at 925.959 kb on + strand, within SMa1657 at 926.004 kb on - strand, within SMa1657 at 926.009 kb on + strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.010 kb on - strand, within SMa1657 at 926.037 kb on + strand, within SMa1657 at 926.053 kb on + strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.136 kb on - strand, within SMa1657 at 926.234 kb on - strand at 926.262 kb on - strand at 926.269 kb on + strand at 926.544 kb on + strand, within SMa1658 at 926.569 kb on + strand, within SMa1658 at 926.585 kb on - strand, within SMa1658 at 926.614 kb on + strand at 926.735 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.752 kb on + strand at 926.753 kb on - strand at 926.764 kb on + strand at 926.765 kb on - strand at 926.765 kb on - strand at 926.765 kb on - strand at 926.852 kb on + strand at 926.886 kb on + strand at 927.098 kb on - strand, within SMa1660 at 927.098 kb on - strand, within SMa1660 at 927.121 kb on + strand, within SMa1660 at 927.253 kb on + strand, within SMa1660
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 924,873 + SMa1654 0.19 +0.5 925,013 - SMa1654 0.39 -0.6 925,162 + SMa1654 0.60 +0.5 925,162 + SMa1654 0.60 -0.3 925,188 - SMa1654 0.64 -1.6 925,188 - SMa1654 0.64 +0.5 925,498 + +0.5 925,691 + -2.3 925,691 + +0.4 925,707 + -2.7 925,708 - -0.3 925,711 + +0.3 925,813 - -2.7 925,813 - +0.9 925,959 + SMa1657 0.27 -3.1 926,004 - SMa1657 0.38 +0.3 926,009 + SMa1657 0.39 -2.1 926,010 - SMa1657 0.40 -1.1 926,010 - SMa1657 0.40 +0.3 926,010 - SMa1657 0.40 -2.5 926,037 + SMa1657 0.46 -0.8 926,053 + SMa1657 0.50 -2.1 926,136 - SMa1657 0.71 +0.4 926,136 - SMa1657 0.71 -0.5 926,234 - -3.1 926,262 - +1.0 926,269 + +1.8 926,544 + SMa1658 0.78 -3.6 926,569 + SMa1658 0.84 -0.2 926,585 - SMa1658 0.89 +0.6 926,614 + -1.1 926,735 + +1.9 926,752 + +0.2 926,752 + -2.6 926,752 + +0.1 926,752 + +0.5 926,753 - -0.1 926,764 + +1.1 926,765 - -2.0 926,765 - +1.2 926,765 - -2.4 926,852 + +0.4 926,886 + +0.9 927,098 - SMa1660 0.39 -0.0 927,098 - SMa1660 0.39 +1.7 927,121 + SMa1660 0.43 -0.0 927,253 + SMa1660 0.65 +0.2
Or see this region's nucleotide sequence