Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1558 and SMa1561 are separated by 9 nucleotides SMa1561 and SMa1562 are separated by 54 nucleotides
SMa1558: SMa1558 - Sensor histidine kinase, at 862,096 to 864,222
SMa1558
SMa1561: SMa1561 - chemotaxis protein CheB, at 864,232 to 865,296
SMa1561
SMa1562: SMa1562 - Pilus assembly protein, at 865,351 to 866,316
SMa1562
Position (kb) 864
865
866 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 863.289 kb on + strand, within SMa1558 at 863.289 kb on + strand, within SMa1558 at 863.289 kb on + strand, within SMa1558 at 863.290 kb on - strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.291 kb on + strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.292 kb on - strand, within SMa1558 at 863.345 kb on + strand, within SMa1558 at 863.346 kb on - strand, within SMa1558 at 863.354 kb on + strand, within SMa1558 at 863.355 kb on - strand, within SMa1558 at 863.507 kb on + strand, within SMa1558 at 863.507 kb on + strand, within SMa1558 at 863.508 kb on - strand, within SMa1558 at 863.530 kb on - strand, within SMa1558 at 863.731 kb on + strand, within SMa1558 at 863.893 kb on + strand, within SMa1558 at 863.894 kb on - strand, within SMa1558 at 863.894 kb on - strand, within SMa1558 at 863.917 kb on - strand, within SMa1558 at 863.919 kb on - strand, within SMa1558 at 864.095 kb on + strand at 864.096 kb on - strand at 864.160 kb on + strand at 864.236 kb on + strand at 864.237 kb on - strand at 864.281 kb on + strand at 864.291 kb on + strand at 864.320 kb on + strand at 864.320 kb on + strand at 864.321 kb on - strand at 864.437 kb on + strand, within SMa1561 at 864.438 kb on - strand, within SMa1561 at 864.464 kb on + strand, within SMa1561 at 864.465 kb on - strand, within SMa1561 at 864.626 kb on + strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.920 kb on - strand, within SMa1561 at 864.969 kb on - strand, within SMa1561 at 865.019 kb on - strand, within SMa1561 at 865.232 kb on + strand at 865.232 kb on + strand at 865.352 kb on + strand at 865.353 kb on - strand at 865.637 kb on + strand, within SMa1562 at 865.638 kb on - strand, within SMa1562 at 865.752 kb on + strand, within SMa1562 at 865.848 kb on - strand, within SMa1562 at 865.926 kb on - strand, within SMa1562 at 866.004 kb on + strand, within SMa1562 at 866.005 kb on - strand, within SMa1562 at 866.116 kb on + strand, within SMa1562 at 866.117 kb on - strand, within SMa1562 at 866.219 kb on + strand, within SMa1562 at 866.219 kb on + strand, within SMa1562 at 866.220 kb on - strand at 866.220 kb on - strand at 866.220 kb on - strand at 866.220 kb on - strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand at 866.269 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 863,289 + SMa1558 0.56 +0.0 863,289 + SMa1558 0.56 -0.7 863,289 + SMa1558 0.56 -0.2 863,290 - SMa1558 0.56 +0.5 863,291 + SMa1558 0.56 -1.2 863,291 + SMa1558 0.56 -0.6 863,291 + SMa1558 0.56 -0.1 863,291 + SMa1558 0.56 -0.2 863,292 - SMa1558 0.56 +1.2 863,292 - SMa1558 0.56 +0.7 863,292 - SMa1558 0.56 +0.8 863,292 - SMa1558 0.56 +1.9 863,292 - SMa1558 0.56 -0.2 863,292 - SMa1558 0.56 -3.7 863,292 - SMa1558 0.56 -4.3 863,345 + SMa1558 0.59 -2.7 863,346 - SMa1558 0.59 -0.1 863,354 + SMa1558 0.59 +0.9 863,355 - SMa1558 0.59 +0.0 863,507 + SMa1558 0.66 +2.5 863,507 + SMa1558 0.66 -1.1 863,508 - SMa1558 0.66 +1.2 863,530 - SMa1558 0.67 -1.3 863,731 + SMa1558 0.77 +1.5 863,893 + SMa1558 0.84 -0.7 863,894 - SMa1558 0.85 -1.2 863,894 - SMa1558 0.85 +0.8 863,917 - SMa1558 0.86 +1.6 863,919 - SMa1558 0.86 -0.6 864,095 + -1.2 864,096 - +1.2 864,160 + -4.2 864,236 + -1.5 864,237 - -1.0 864,281 + +0.5 864,291 + -0.0 864,320 + +0.5 864,320 + -0.9 864,321 - +0.3 864,437 + SMa1561 0.19 -1.5 864,438 - SMa1561 0.19 +0.0 864,464 + SMa1561 0.22 -2.0 864,465 - SMa1561 0.22 -0.8 864,626 + SMa1561 0.37 -0.6 864,920 - SMa1561 0.65 -1.5 864,920 - SMa1561 0.65 -3.6 864,920 - SMa1561 0.65 -0.9 864,969 - SMa1561 0.69 -0.4 865,019 - SMa1561 0.74 -3.7 865,232 + +0.5 865,232 + -3.1 865,352 + +1.2 865,353 - -3.8 865,637 + SMa1562 0.30 +1.6 865,638 - SMa1562 0.30 +1.1 865,752 + SMa1562 0.42 +1.1 865,848 - SMa1562 0.51 +1.7 865,926 - SMa1562 0.60 +0.3 866,004 + SMa1562 0.68 +0.7 866,005 - SMa1562 0.68 +1.6 866,116 + SMa1562 0.79 -0.4 866,117 - SMa1562 0.79 -3.3 866,219 + SMa1562 0.90 +2.7 866,219 + SMa1562 0.90 +1.4 866,220 - -0.4 866,220 - +1.9 866,220 - +0.5 866,220 - -1.7 866,269 + -2.0 866,269 + +1.0 866,269 + -1.4 866,269 + +0.3 866,269 + +1.8 866,269 + -0.7
Or see this region's nucleotide sequence