Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1513 and SMa1514 overlap by 1 nucleotides SMa1514 and SMa1515 are separated by 45 nucleotides SMa1515 and SMa1516 are separated by 353 nucleotides
SMa1513: SMa1513 - ABC transporter permease, at 833,962 to 834,984
SMa1513
SMa1514: SMa1514 - ABC transporter permease, at 834,984 to 835,904
SMa1514
SMa1515: SMa1515 - hypothetical protein, at 835,950 to 836,141
SMa1515
SMa1516: SMa1516 - NuoH2 NADH:ubiquinone oxidoreductase subunit 1 (chain H), at 836,495 to 837,481
SMa1516
Position (kb) 834
835
836 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 834.240 kb on - strand, within SMa1513 at 834.383 kb on - strand, within SMa1513 at 834.383 kb on - strand, within SMa1513 at 834.383 kb on - strand, within SMa1513 at 834.448 kb on + strand, within SMa1513 at 834.499 kb on + strand, within SMa1513 at 834.499 kb on + strand, within SMa1513 at 834.586 kb on + strand, within SMa1513 at 834.587 kb on - strand, within SMa1513 at 834.587 kb on - strand, within SMa1513 at 834.628 kb on + strand, within SMa1513 at 834.628 kb on + strand, within SMa1513 at 834.952 kb on + strand at 834.952 kb on + strand at 834.955 kb on + strand at 834.956 kb on - strand at 835.039 kb on + strand at 835.039 kb on + strand at 835.248 kb on + strand, within SMa1514 at 835.249 kb on - strand, within SMa1514 at 835.249 kb on - strand, within SMa1514 at 835.594 kb on - strand, within SMa1514 at 835.594 kb on - strand, within SMa1514 at 835.608 kb on + strand, within SMa1514 at 835.608 kb on + strand, within SMa1514 at 835.608 kb on + strand, within SMa1514 at 835.800 kb on + strand, within SMa1514 at 835.816 kb on + strand at 835.816 kb on + strand at 835.816 kb on + strand at 835.816 kb on + strand at 835.816 kb on + strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.817 kb on - strand at 835.902 kb on + strand at 835.962 kb on + strand at 835.962 kb on + strand at 835.963 kb on - strand at 836.120 kb on + strand, within SMa1515 at 836.120 kb on + strand, within SMa1515 at 836.120 kb on + strand, within SMa1515 at 836.121 kb on - strand, within SMa1515 at 836.121 kb on - strand, within SMa1515 at 836.273 kb on + strand at 836.388 kb on + strand at 836.503 kb on + strand at 836.700 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.701 kb on + strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.702 kb on - strand, within SMa1516 at 836.703 kb on + strand, within SMa1516 at 836.704 kb on - strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.831 kb on + strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.832 kb on - strand, within SMa1516 at 836.850 kb on + strand, within SMa1516 at 836.851 kb on - strand, within SMa1516 at 836.851 kb on - strand, within SMa1516 at 836.891 kb on + strand, within SMa1516 at 836.891 kb on + strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516 at 836.892 kb on - strand, within SMa1516
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 834,240 - SMa1513 0.27 -1.6 834,383 - SMa1513 0.41 -0.9 834,383 - SMa1513 0.41 +0.8 834,383 - SMa1513 0.41 +1.0 834,448 + SMa1513 0.48 +0.6 834,499 + SMa1513 0.52 -3.2 834,499 + SMa1513 0.52 -0.5 834,586 + SMa1513 0.61 +0.6 834,587 - SMa1513 0.61 -1.8 834,587 - SMa1513 0.61 +1.3 834,628 + SMa1513 0.65 +1.1 834,628 + SMa1513 0.65 -2.7 834,952 + +0.2 834,952 + -0.9 834,955 + +4.0 834,956 - -0.3 835,039 + -1.3 835,039 + -1.5 835,248 + SMa1514 0.29 +0.0 835,249 - SMa1514 0.29 -0.3 835,249 - SMa1514 0.29 -0.3 835,594 - SMa1514 0.66 +0.4 835,594 - SMa1514 0.66 -0.2 835,608 + SMa1514 0.68 -1.4 835,608 + SMa1514 0.68 -4.0 835,608 + SMa1514 0.68 +0.8 835,800 + SMa1514 0.89 -1.8 835,816 + +0.6 835,816 + +1.8 835,816 + +0.4 835,816 + -1.9 835,816 + +0.3 835,817 - +0.7 835,817 - +0.6 835,817 - -3.4 835,817 - -2.1 835,817 - -1.3 835,817 - -2.4 835,817 - -0.9 835,902 + +0.9 835,962 + +1.8 835,962 + -1.7 835,963 - +4.3 836,120 + SMa1515 0.89 +0.3 836,120 + SMa1515 0.89 +0.6 836,120 + SMa1515 0.89 +0.3 836,121 - SMa1515 0.89 +0.3 836,121 - SMa1515 0.89 -3.4 836,273 + +0.9 836,388 + -0.2 836,503 + +3.3 836,700 + SMa1516 0.21 +0.0 836,701 + SMa1516 0.21 -4.1 836,701 + SMa1516 0.21 +0.1 836,701 + SMa1516 0.21 +0.5 836,702 - SMa1516 0.21 +1.7 836,702 - SMa1516 0.21 -0.0 836,702 - SMa1516 0.21 +0.4 836,702 - SMa1516 0.21 -1.2 836,703 + SMa1516 0.21 -1.0 836,704 - SMa1516 0.21 -1.9 836,831 + SMa1516 0.34 +1.4 836,831 + SMa1516 0.34 -0.9 836,831 + SMa1516 0.34 +1.0 836,832 - SMa1516 0.34 -1.1 836,832 - SMa1516 0.34 -2.4 836,832 - SMa1516 0.34 -0.9 836,850 + SMa1516 0.36 -0.6 836,851 - SMa1516 0.36 +0.9 836,851 - SMa1516 0.36 -1.8 836,891 + SMa1516 0.40 +0.2 836,891 + SMa1516 0.40 -0.4 836,892 - SMa1516 0.40 +1.2 836,892 - SMa1516 0.40 -1.0 836,892 - SMa1516 0.40 +0.9 836,892 - SMa1516 0.40 -0.6
Or see this region's nucleotide sequence