Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1466 and SMa1467 overlap by 4 nucleotides SMa1467 and SMa1471 are separated by 150 nucleotides SMa1471 and SMa1473 overlap by 1 nucleotides
SMa1466: SMa1466 - ABC transporter ATP-binding protein, at 807,254 to 808,369
SMa1466
SMa1467: SMa1467 - inner-membrane permease, at 808,366 to 809,028
SMa1467
SMa1471: SMa1471 - hypothetical protein, at 809,179 to 809,859
SMa1471
SMa1473: SMa1473 - aminopeptidase, at 809,859 to 811,163
SMa1473
Position (kb) 809
810 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 808.286 kb on + strand at 808.544 kb on + strand, within SMa1467 at 808.545 kb on - strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.745 kb on + strand, within SMa1467 at 808.760 kb on - strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.776 kb on - strand, within SMa1467 at 808.987 kb on + strand at 808.988 kb on - strand at 809.050 kb on - strand at 809.050 kb on - strand at 809.167 kb on + strand at 809.220 kb on - strand at 809.263 kb on - strand, within SMa1471 at 809.263 kb on - strand, within SMa1471 at 809.315 kb on + strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.386 kb on + strand, within SMa1471 at 809.387 kb on - strand, within SMa1471 at 809.541 kb on + strand, within SMa1471 at 809.541 kb on + strand, within SMa1471 at 809.680 kb on - strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.681 kb on + strand, within SMa1471 at 809.682 kb on - strand, within SMa1471 at 809.759 kb on + strand, within SMa1471 at 809.927 kb on + strand at 809.982 kb on - strand at 809.983 kb on + strand at 809.983 kb on + strand at 809.984 kb on - strand at 809.984 kb on - strand at 809.984 kb on - strand at 810.019 kb on + strand, within SMa1473 at 810.019 kb on + strand, within SMa1473 at 810.020 kb on - strand, within SMa1473 at 810.043 kb on + strand, within SMa1473 at 810.044 kb on - strand, within SMa1473 at 810.044 kb on - strand, within SMa1473 at 810.110 kb on - strand, within SMa1473 at 810.135 kb on + strand, within SMa1473 at 810.136 kb on - strand, within SMa1473 at 810.136 kb on - strand, within SMa1473 at 810.136 kb on - strand, within SMa1473 at 810.214 kb on + strand, within SMa1473 at 810.215 kb on - strand, within SMa1473 at 810.226 kb on + strand, within SMa1473 at 810.242 kb on - strand, within SMa1473 at 810.295 kb on + strand, within SMa1473 at 810.300 kb on + strand, within SMa1473 at 810.314 kb on + strand, within SMa1473 at 810.321 kb on - strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.451 kb on + strand, within SMa1473 at 810.452 kb on - strand, within SMa1473 at 810.541 kb on - strand, within SMa1473 at 810.541 kb on - strand, within SMa1473 at 810.546 kb on + strand, within SMa1473 at 810.546 kb on + strand, within SMa1473 at 810.798 kb on + strand, within SMa1473 at 810.798 kb on + strand, within SMa1473 at 810.799 kb on - strand, within SMa1473 at 810.826 kb on + strand, within SMa1473 at 810.827 kb on - strand, within SMa1473
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 808,286 + +0.8 808,544 + SMa1467 0.27 -0.9 808,545 - SMa1467 0.27 +3.1 808,715 + SMa1467 0.53 +0.3 808,715 + SMa1467 0.53 -0.7 808,715 + SMa1467 0.53 -2.2 808,715 + SMa1467 0.53 -1.0 808,715 + SMa1467 0.53 -1.3 808,716 - SMa1467 0.53 -1.1 808,716 - SMa1467 0.53 +0.4 808,716 - SMa1467 0.53 -0.3 808,745 + SMa1467 0.57 -0.7 808,760 - SMa1467 0.59 -0.8 808,775 + SMa1467 0.62 -0.2 808,775 + SMa1467 0.62 +0.0 808,776 - SMa1467 0.62 -3.0 808,987 + +0.2 808,988 - -0.9 809,050 - -0.6 809,050 - +0.6 809,167 + +1.5 809,220 - -0.9 809,263 - SMa1471 0.12 -4.3 809,263 - SMa1471 0.12 +1.6 809,315 + SMa1471 0.20 +0.0 809,316 - SMa1471 0.20 -0.8 809,316 - SMa1471 0.20 -0.4 809,316 - SMa1471 0.20 +0.2 809,386 + SMa1471 0.30 -1.0 809,387 - SMa1471 0.31 +1.4 809,541 + SMa1471 0.53 -0.1 809,541 + SMa1471 0.53 +0.6 809,680 - SMa1471 0.74 -0.9 809,681 + SMa1471 0.74 +0.2 809,681 + SMa1471 0.74 -0.0 809,681 + SMa1471 0.74 +0.2 809,682 - SMa1471 0.74 +0.1 809,759 + SMa1471 0.85 -2.6 809,927 + +1.8 809,982 - -1.3 809,983 + -1.1 809,983 + +1.5 809,984 - -0.6 809,984 - +0.5 809,984 - +0.6 810,019 + SMa1473 0.12 +0.9 810,019 + SMa1473 0.12 +0.6 810,020 - SMa1473 0.12 +0.1 810,043 + SMa1473 0.14 -1.4 810,044 - SMa1473 0.14 -1.8 810,044 - SMa1473 0.14 +0.6 810,110 - SMa1473 0.19 -0.0 810,135 + SMa1473 0.21 -0.1 810,136 - SMa1473 0.21 -2.7 810,136 - SMa1473 0.21 -0.1 810,136 - SMa1473 0.21 -1.0 810,214 + SMa1473 0.27 -2.1 810,215 - SMa1473 0.27 +0.2 810,226 + SMa1473 0.28 -0.8 810,242 - SMa1473 0.29 -1.3 810,295 + SMa1473 0.33 -0.6 810,300 + SMa1473 0.34 -0.8 810,314 + SMa1473 0.35 +0.5 810,321 - SMa1473 0.35 -3.0 810,451 + SMa1473 0.45 -0.7 810,451 + SMa1473 0.45 -0.1 810,451 + SMa1473 0.45 -2.6 810,451 + SMa1473 0.45 +0.0 810,452 - SMa1473 0.45 +1.2 810,541 - SMa1473 0.52 -1.2 810,541 - SMa1473 0.52 +0.4 810,546 + SMa1473 0.53 +0.4 810,546 + SMa1473 0.53 -2.9 810,798 + SMa1473 0.72 -3.0 810,798 + SMa1473 0.72 +0.9 810,799 - SMa1473 0.72 +0.0 810,826 + SMa1473 0.74 +0.1 810,827 - SMa1473 0.74 -2.1
Or see this region's nucleotide sequence