Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1462 and SMa1465 are separated by 23 nucleotides SMa1465 and SMa1466 overlap by 4 nucleotides SMa1466 and SMa1467 overlap by 4 nucleotides SMa1467 and SMa1471 are separated by 150 nucleotides
SMa1462: SMa1462 - ABC transporter, at 805,588 to 806,478
SMa1462
SMa1465: SMa1465 - ABC transporter permease, at 806,502 to 807,257
SMa1465
SMa1466: SMa1466 - ABC transporter ATP-binding protein, at 807,254 to 808,369
SMa1466
SMa1467: SMa1467 - inner-membrane permease, at 808,366 to 809,028
SMa1467
SMa1471: SMa1471 - hypothetical protein, at 809,179 to 809,859
SMa1471
Position (kb) 807
808
809 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 806.503 kb on + strand at 806.537 kb on - strand at 806.540 kb on - strand at 806.845 kb on + strand, within SMa1465 at 806.845 kb on + strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.846 kb on - strand, within SMa1465 at 806.907 kb on - strand, within SMa1465 at 807.103 kb on + strand, within SMa1465 at 807.121 kb on + strand, within SMa1465 at 807.280 kb on - strand at 807.280 kb on - strand at 807.297 kb on + strand at 807.708 kb on + strand, within SMa1466 at 807.708 kb on + strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 807.737 kb on - strand, within SMa1466 at 808.072 kb on + strand, within SMa1466 at 808.123 kb on - strand, within SMa1466 at 808.286 kb on + strand at 808.544 kb on + strand, within SMa1467 at 808.545 kb on - strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.715 kb on + strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.716 kb on - strand, within SMa1467 at 808.745 kb on + strand, within SMa1467 at 808.760 kb on - strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.775 kb on + strand, within SMa1467 at 808.776 kb on - strand, within SMa1467 at 808.987 kb on + strand at 808.988 kb on - strand at 809.050 kb on - strand at 809.050 kb on - strand at 809.167 kb on + strand at 809.220 kb on - strand at 809.263 kb on - strand, within SMa1471 at 809.263 kb on - strand, within SMa1471 at 809.315 kb on + strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471 at 809.316 kb on - strand, within SMa1471
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 806,503 + -2.0 806,537 - -2.4 806,540 - -0.7 806,845 + SMa1465 0.45 +2.0 806,845 + SMa1465 0.45 -0.5 806,846 - SMa1465 0.46 -2.6 806,846 - SMa1465 0.46 -2.4 806,846 - SMa1465 0.46 -0.6 806,907 - SMa1465 0.54 +1.3 807,103 + SMa1465 0.79 +1.2 807,121 + SMa1465 0.82 +0.9 807,280 - -0.3 807,280 - -2.9 807,297 + -4.8 807,708 + SMa1466 0.41 -3.4 807,708 + SMa1466 0.41 -1.9 807,737 - SMa1466 0.43 -0.0 807,737 - SMa1466 0.43 -0.8 808,072 + SMa1466 0.73 -0.7 808,123 - SMa1466 0.78 -0.5 808,286 + +0.8 808,544 + SMa1467 0.27 -0.9 808,545 - SMa1467 0.27 +3.1 808,715 + SMa1467 0.53 +0.3 808,715 + SMa1467 0.53 -0.7 808,715 + SMa1467 0.53 -2.2 808,715 + SMa1467 0.53 -1.0 808,715 + SMa1467 0.53 -1.3 808,716 - SMa1467 0.53 -1.1 808,716 - SMa1467 0.53 +0.4 808,716 - SMa1467 0.53 -0.3 808,745 + SMa1467 0.57 -0.7 808,760 - SMa1467 0.59 -0.8 808,775 + SMa1467 0.62 -0.2 808,775 + SMa1467 0.62 +0.0 808,776 - SMa1467 0.62 -3.0 808,987 + +0.2 808,988 - -0.9 809,050 - -0.6 809,050 - +0.6 809,167 + +1.5 809,220 - -0.9 809,263 - SMa1471 0.12 -4.3 809,263 - SMa1471 0.12 +1.6 809,315 + SMa1471 0.20 +0.0 809,316 - SMa1471 0.20 -0.8 809,316 - SMa1471 0.20 -0.4 809,316 - SMa1471 0.20 +0.2
Or see this region's nucleotide sequence