Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1459 and SMa1461 overlap by 4 nucleotides SMa1461 and SMa1462 are separated by 126 nucleotides
SMa1459: SMa1459 - Dehydrogenase, malate/L-lactate family, at 803,336 to 804,340
SMa1459
SMa1461: SMa1461 - muconate cycloisomerase, at 804,337 to 805,461
SMa1461
SMa1462: SMa1462 - ABC transporter, at 805,588 to 806,478
SMa1462
Position (kb) 804
805
806 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 803.338 kb on - strand at 803.645 kb on - strand, within SMa1459 at 803.846 kb on + strand, within SMa1459 at 803.939 kb on - strand, within SMa1459 at 803.989 kb on + strand, within SMa1459 at 803.989 kb on + strand, within SMa1459 at 803.991 kb on + strand, within SMa1459 at 803.991 kb on + strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 803.992 kb on - strand, within SMa1459 at 804.190 kb on - strand, within SMa1459 at 804.190 kb on - strand, within SMa1459 at 804.192 kb on + strand, within SMa1459 at 804.192 kb on + strand, within SMa1459 at 804.532 kb on - strand, within SMa1461 at 804.691 kb on + strand, within SMa1461 at 804.821 kb on + strand, within SMa1461 at 804.969 kb on - strand, within SMa1461 at 804.969 kb on - strand, within SMa1461 at 805.046 kb on + strand, within SMa1461 at 805.047 kb on - strand, within SMa1461 at 805.052 kb on + strand, within SMa1461 at 805.132 kb on - strand, within SMa1461 at 805.132 kb on - strand, within SMa1461 at 805.177 kb on - strand, within SMa1461 at 805.196 kb on + strand, within SMa1461 at 805.196 kb on + strand, within SMa1461 at 805.197 kb on - strand, within SMa1461 at 805.392 kb on - strand at 805.501 kb on + strand at 805.502 kb on - strand at 805.504 kb on - strand at 805.590 kb on - strand at 805.610 kb on + strand at 805.772 kb on + strand, within SMa1462 at 805.772 kb on + strand, within SMa1462 at 805.886 kb on + strand, within SMa1462 at 805.887 kb on - strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.005 kb on + strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.006 kb on - strand, within SMa1462 at 806.007 kb on + strand, within SMa1462 at 806.007 kb on + strand, within SMa1462 at 806.024 kb on + strand, within SMa1462 at 806.024 kb on + strand, within SMa1462 at 806.073 kb on + strand, within SMa1462 at 806.090 kb on + strand, within SMa1462 at 806.091 kb on - strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.096 kb on + strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.097 kb on - strand, within SMa1462 at 806.101 kb on - strand, within SMa1462 at 806.229 kb on + strand, within SMa1462 at 806.230 kb on - strand, within SMa1462
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 803,338 - +0.9 803,645 - SMa1459 0.31 +1.3 803,846 + SMa1459 0.51 -0.4 803,939 - SMa1459 0.60 +0.4 803,989 + SMa1459 0.65 +0.2 803,989 + SMa1459 0.65 -0.3 803,991 + SMa1459 0.65 -0.1 803,991 + SMa1459 0.65 +0.1 803,992 - SMa1459 0.65 -0.5 803,992 - SMa1459 0.65 -3.4 803,992 - SMa1459 0.65 +0.8 804,190 - SMa1459 0.85 +1.1 804,190 - SMa1459 0.85 -2.3 804,192 + SMa1459 0.85 -4.8 804,192 + SMa1459 0.85 +0.6 804,532 - SMa1461 0.17 -2.2 804,691 + SMa1461 0.31 -1.4 804,821 + SMa1461 0.43 -0.1 804,969 - SMa1461 0.56 -1.3 804,969 - SMa1461 0.56 -0.0 805,046 + SMa1461 0.63 -2.5 805,047 - SMa1461 0.63 +0.7 805,052 + SMa1461 0.64 -0.1 805,132 - SMa1461 0.71 +0.6 805,132 - SMa1461 0.71 +0.1 805,177 - SMa1461 0.75 -1.2 805,196 + SMa1461 0.76 -0.0 805,196 + SMa1461 0.76 +0.3 805,197 - SMa1461 0.76 +0.4 805,392 - -0.1 805,501 + -1.9 805,502 - +0.0 805,504 - +0.1 805,590 - +0.2 805,610 + -3.7 805,772 + SMa1462 0.21 +2.0 805,772 + SMa1462 0.21 -0.2 805,886 + SMa1462 0.33 -0.1 805,887 - SMa1462 0.34 -4.3 806,005 + SMa1462 0.47 +1.1 806,005 + SMa1462 0.47 -4.2 806,005 + SMa1462 0.47 -0.8 806,005 + SMa1462 0.47 +0.3 806,005 + SMa1462 0.47 +1.6 806,006 - SMa1462 0.47 -0.1 806,006 - SMa1462 0.47 -1.0 806,006 - SMa1462 0.47 -0.0 806,006 - SMa1462 0.47 -0.2 806,006 - SMa1462 0.47 -2.9 806,007 + SMa1462 0.47 -0.1 806,007 + SMa1462 0.47 -0.6 806,024 + SMa1462 0.49 -0.1 806,024 + SMa1462 0.49 +2.2 806,073 + SMa1462 0.54 +0.8 806,090 + SMa1462 0.56 +0.6 806,091 - SMa1462 0.56 -0.2 806,096 + SMa1462 0.57 -0.2 806,096 + SMa1462 0.57 +1.0 806,096 + SMa1462 0.57 -0.7 806,096 + SMa1462 0.57 -0.1 806,096 + SMa1462 0.57 -1.9 806,096 + SMa1462 0.57 +0.3 806,096 + SMa1462 0.57 -2.3 806,097 - SMa1462 0.57 -1.5 806,097 - SMa1462 0.57 +0.3 806,097 - SMa1462 0.57 +0.1 806,097 - SMa1462 0.57 +0.5 806,101 - SMa1462 0.58 +0.5 806,229 + SMa1462 0.72 +0.6 806,230 - SMa1462 0.72 -1.0
Or see this region's nucleotide sequence