Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1454 and SMa1455 overlap by 19 nucleotides SMa1455 and SMa1456 overlap by 4 nucleotides SMa1456 and SMa1459 are separated by 107 nucleotides
SMa1454: SMa1454 - AraC family transcriptional regulator, at 801,299 to 802,342
SMa1454
SMa1455: SMa1455 - hypothetical protein, at 802,324 to 802,842
SMa1455
SMa1456: SMa1456 - hypothetical protein, at 802,839 to 803,228
SMa1456
SMa1459: SMa1459 - Dehydrogenase, malate/L-lactate family, at 803,336 to 804,340
SMa1459
Position (kb) 802
803 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1 at 801.437 kb on + strand, within SMa1454 at 801.438 kb on - strand, within SMa1454 at 801.594 kb on + strand, within SMa1454 at 801.595 kb on - strand, within SMa1454 at 801.696 kb on - strand, within SMa1454 at 801.700 kb on + strand, within SMa1454 at 801.700 kb on + strand, within SMa1454 at 801.876 kb on - strand, within SMa1454 at 801.876 kb on - strand, within SMa1454 at 801.943 kb on + strand, within SMa1454 at 801.944 kb on - strand, within SMa1454 at 801.988 kb on - strand, within SMa1454 at 801.988 kb on - strand, within SMa1454 at 802.006 kb on + strand, within SMa1454 at 802.007 kb on - strand, within SMa1454 at 802.007 kb on - strand, within SMa1454 at 802.273 kb on + strand at 802.274 kb on - strand at 802.279 kb on + strand at 802.280 kb on - strand at 802.347 kb on + strand at 802.370 kb on + strand at 802.370 kb on + strand at 802.371 kb on - strand at 802.371 kb on - strand at 802.371 kb on - strand at 802.637 kb on + strand, within SMa1455 at 802.637 kb on + strand, within SMa1455 at 802.638 kb on - strand, within SMa1455 at 802.722 kb on - strand, within SMa1455 at 803.176 kb on + strand, within SMa1456 at 803.176 kb on + strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.177 kb on - strand, within SMa1456 at 803.229 kb on - strand at 803.250 kb on + strand at 803.338 kb on - strand at 803.645 kb on - strand, within SMa1459
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 801,437 + SMa1454 0.13 +1.4 801,438 - SMa1454 0.13 +0.7 801,594 + SMa1454 0.28 -1.5 801,595 - SMa1454 0.28 -1.3 801,696 - SMa1454 0.38 +0.1 801,700 + SMa1454 0.38 -0.3 801,700 + SMa1454 0.38 -0.6 801,876 - SMa1454 0.55 -3.2 801,876 - SMa1454 0.55 +0.4 801,943 + SMa1454 0.62 -2.8 801,944 - SMa1454 0.62 +0.5 801,988 - SMa1454 0.66 -0.7 801,988 - SMa1454 0.66 +0.1 802,006 + SMa1454 0.68 -0.5 802,007 - SMa1454 0.68 +0.2 802,007 - SMa1454 0.68 -2.0 802,273 + +0.1 802,274 - +0.9 802,279 + -1.2 802,280 - +0.3 802,347 + +0.1 802,370 + -0.1 802,370 + -2.3 802,371 - +0.1 802,371 - -3.5 802,371 - +0.0 802,637 + SMa1455 0.60 -1.8 802,637 + SMa1455 0.60 -1.8 802,638 - SMa1455 0.61 +0.8 802,722 - SMa1455 0.77 -4.4 803,176 + SMa1456 0.86 +0.2 803,176 + SMa1456 0.86 -0.3 803,177 - SMa1456 0.87 -1.9 803,177 - SMa1456 0.87 -0.1 803,177 - SMa1456 0.87 -2.8 803,177 - SMa1456 0.87 +0.3 803,229 - -1.6 803,250 + +0.0 803,338 - +0.9 803,645 - SMa1459 0.31 +1.3
Or see this region's nucleotide sequence