Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1417 and SMa1418 are separated by 18 nucleotides SMa1418 and SMa1421 are separated by 7 nucleotides SMa1421 and SMa1424 are separated by 10 nucleotides
SMa1417: SMa1417 - Dehydrogenase, Zn-dependent, at 780,875 to 781,900
SMa1417
SMa1418: SMa1418 - ABC transporter permease, at 781,919 to 782,860
SMa1418
SMa1421: SMa1421 - ABC transporter ATP-binding protein, at 782,868 to 784,379
SMa1421
SMa1424: SMa1424 - ABC transporter permease, at 784,390 to 785,355
SMa1424
Position (kb) 782
783
784
785 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 781.921 kb on - strand at 782.240 kb on + strand, within SMa1418 at 782.240 kb on + strand, within SMa1418 at 782.247 kb on + strand, within SMa1418 at 782.532 kb on + strand, within SMa1418 at 782.550 kb on + strand, within SMa1418 at 782.550 kb on + strand, within SMa1418 at 782.689 kb on + strand, within SMa1418 at 782.691 kb on + strand, within SMa1418 at 782.691 kb on + strand, within SMa1418 at 782.692 kb on - strand, within SMa1418 at 782.852 kb on + strand at 782.852 kb on + strand at 782.853 kb on - strand at 782.853 kb on - strand at 782.863 kb on + strand at 782.863 kb on + strand at 782.863 kb on + strand at 782.878 kb on + strand at 782.878 kb on + strand at 782.879 kb on - strand at 782.893 kb on + strand at 782.894 kb on - strand at 782.894 kb on - strand at 782.894 kb on - strand at 782.966 kb on + strand at 782.966 kb on + strand at 783.397 kb on + strand, within SMa1421 at 783.397 kb on + strand, within SMa1421 at 783.398 kb on - strand, within SMa1421 at 783.398 kb on - strand, within SMa1421 at 783.457 kb on + strand, within SMa1421 at 783.457 kb on + strand, within SMa1421 at 783.457 kb on + strand, within SMa1421 at 783.458 kb on - strand, within SMa1421 at 783.458 kb on - strand, within SMa1421 at 783.542 kb on + strand, within SMa1421 at 783.543 kb on - strand, within SMa1421 at 783.604 kb on + strand, within SMa1421 at 783.606 kb on - strand, within SMa1421 at 783.631 kb on + strand, within SMa1421 at 783.632 kb on - strand, within SMa1421 at 783.632 kb on - strand, within SMa1421 at 783.633 kb on + strand, within SMa1421 at 783.740 kb on - strand, within SMa1421 at 783.740 kb on - strand, within SMa1421 at 783.789 kb on + strand, within SMa1421 at 784.079 kb on - strand, within SMa1421 at 784.228 kb on + strand at 784.229 kb on - strand at 784.237 kb on + strand at 784.237 kb on + strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.238 kb on - strand at 784.375 kb on + strand at 784.375 kb on + strand at 784.376 kb on - strand at 784.376 kb on - strand at 784.776 kb on - strand, within SMa1424 at 784.776 kb on - strand, within SMa1424 at 784.776 kb on - strand, within SMa1424 at 784.844 kb on + strand, within SMa1424 at 784.844 kb on + strand, within SMa1424 at 784.844 kb on + strand, within SMa1424 at 784.915 kb on + strand, within SMa1424 at 785.029 kb on + strand, within SMa1424 at 785.029 kb on + strand, within SMa1424 at 785.029 kb on + strand, within SMa1424 at 785.030 kb on - strand, within SMa1424 at 785.030 kb on - strand, within SMa1424 at 785.030 kb on - strand, within SMa1424
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 781,921 - -0.5 782,240 + SMa1418 0.34 +0.5 782,240 + SMa1418 0.34 +0.9 782,247 + SMa1418 0.35 +0.3 782,532 + SMa1418 0.65 -2.2 782,550 + SMa1418 0.67 -0.4 782,550 + SMa1418 0.67 -0.9 782,689 + SMa1418 0.82 +2.0 782,691 + SMa1418 0.82 -0.9 782,691 + SMa1418 0.82 -0.4 782,692 - SMa1418 0.82 +0.1 782,852 + -0.4 782,852 + -1.3 782,853 - -0.9 782,853 - +0.4 782,863 + -1.0 782,863 + -2.0 782,863 + -0.3 782,878 + +1.0 782,878 + +0.8 782,879 - -0.3 782,893 + +0.9 782,894 - -3.0 782,894 - +2.2 782,894 - +0.8 782,966 + +0.5 782,966 + -0.1 783,397 + SMa1421 0.35 +1.7 783,397 + SMa1421 0.35 +0.5 783,398 - SMa1421 0.35 -2.2 783,398 - SMa1421 0.35 -4.0 783,457 + SMa1421 0.39 +0.9 783,457 + SMa1421 0.39 -1.0 783,457 + SMa1421 0.39 +0.4 783,458 - SMa1421 0.39 -0.7 783,458 - SMa1421 0.39 -0.7 783,542 + SMa1421 0.45 -3.8 783,543 - SMa1421 0.45 -4.8 783,604 + SMa1421 0.49 +0.2 783,606 - SMa1421 0.49 +1.1 783,631 + SMa1421 0.50 -3.2 783,632 - SMa1421 0.51 +0.3 783,632 - SMa1421 0.51 -1.5 783,633 + SMa1421 0.51 -0.9 783,740 - SMa1421 0.58 -0.1 783,740 - SMa1421 0.58 -1.0 783,789 + SMa1421 0.61 -2.7 784,079 - SMa1421 0.80 -2.6 784,228 + -0.2 784,229 - -0.3 784,237 + +1.5 784,237 + +0.4 784,238 - -1.1 784,238 - +0.8 784,238 - +1.7 784,238 - -0.8 784,238 - -3.3 784,375 + -0.3 784,375 + +1.4 784,376 - -1.9 784,376 - -1.6 784,776 - SMa1424 0.40 -0.3 784,776 - SMa1424 0.40 +0.3 784,776 - SMa1424 0.40 -1.5 784,844 + SMa1424 0.47 +0.3 784,844 + SMa1424 0.47 -0.0 784,844 + SMa1424 0.47 -0.8 784,915 + SMa1424 0.54 +0.9 785,029 + SMa1424 0.66 +1.2 785,029 + SMa1424 0.66 +0.0 785,029 + SMa1424 0.66 -0.1 785,030 - SMa1424 0.66 -0.4 785,030 - SMa1424 0.66 +0.2 785,030 - SMa1424 0.66 +0.8
Or see this region's nucleotide sequence