Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1347 and SMa1349 are separated by 25 nucleotides SMa1349 and SMa1351 are separated by 2 nucleotides
SMa1347: SMa1347 - dehydrogenase, at 737,144 to 738,118
SMa1347
SMa1349: SMa1349 - GntR family transcriptional regulator, at 738,144 to 738,836
SMa1349
SMa1351: SMa1351 - enolase, at 738,839 to 740,047
SMa1351
Position (kb) 738
739 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 737.145 kb on + strand at 737.322 kb on + strand, within SMa1347 at 737.322 kb on + strand, within SMa1347 at 737.322 kb on + strand, within SMa1347 at 737.323 kb on - strand, within SMa1347 at 737.323 kb on - strand, within SMa1347 at 737.350 kb on + strand, within SMa1347 at 737.351 kb on - strand at 737.351 kb on - strand, within SMa1347 at 737.637 kb on + strand, within SMa1347 at 737.740 kb on + strand, within SMa1347 at 737.740 kb on + strand, within SMa1347 at 737.773 kb on + strand, within SMa1347 at 737.925 kb on - strand, within SMa1347 at 737.943 kb on - strand, within SMa1347 at 738.071 kb on - strand at 738.071 kb on - strand at 738.146 kb on - strand at 738.263 kb on - strand, within SMa1349 at 738.266 kb on + strand, within SMa1349 at 738.266 kb on + strand, within SMa1349 at 738.272 kb on + strand, within SMa1349 at 738.273 kb on - strand, within SMa1349 at 738.273 kb on - strand, within SMa1349 at 738.273 kb on - strand, within SMa1349 at 738.316 kb on + strand, within SMa1349 at 738.316 kb on + strand, within SMa1349 at 738.321 kb on - strand, within SMa1349 at 738.346 kb on + strand, within SMa1349 at 738.347 kb on - strand, within SMa1349 at 738.347 kb on - strand, within SMa1349 at 738.349 kb on + strand, within SMa1349 at 738.451 kb on + strand, within SMa1349 at 738.491 kb on - strand, within SMa1349 at 738.491 kb on - strand, within SMa1349 at 738.491 kb on - strand, within SMa1349 at 738.569 kb on - strand, within SMa1349 at 738.650 kb on - strand, within SMa1349 at 738.650 kb on - strand, within SMa1349 at 738.654 kb on - strand, within SMa1349 at 738.795 kb on + strand at 738.795 kb on + strand at 738.796 kb on - strand at 738.837 kb on - strand at 738.840 kb on + strand at 738.879 kb on - strand at 738.914 kb on + strand at 738.915 kb on - strand at 739.121 kb on - strand, within SMa1351 at 739.267 kb on + strand, within SMa1351 at 739.267 kb on + strand, within SMa1351 at 739.268 kb on - strand, within SMa1351 at 739.379 kb on - strand, within SMa1351 at 739.434 kb on + strand, within SMa1351 at 739.434 kb on + strand, within SMa1351 at 739.498 kb on - strand, within SMa1351 at 739.551 kb on + strand, within SMa1351 at 739.551 kb on + strand, within SMa1351 at 739.551 kb on + strand, within SMa1351 at 739.551 kb on + strand, within SMa1351 at 739.573 kb on + strand, within SMa1351 at 739.574 kb on - strand, within SMa1351 at 739.654 kb on + strand, within SMa1351 at 739.693 kb on + strand, within SMa1351 at 739.737 kb on + strand, within SMa1351 at 739.738 kb on - strand, within SMa1351 at 739.762 kb on + strand, within SMa1351 at 739.803 kb on + strand, within SMa1351 at 739.831 kb on - strand, within SMa1351
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 737,145 + +1.5 737,322 + SMa1347 0.18 -0.2 737,322 + SMa1347 0.18 +0.3 737,322 + SMa1347 0.18 -3.1 737,323 - SMa1347 0.18 -0.9 737,323 - SMa1347 0.18 -1.6 737,350 + SMa1347 0.21 -0.1 737,351 - -1.0 737,351 - SMa1347 0.21 +0.0 737,637 + SMa1347 0.51 -0.7 737,740 + SMa1347 0.61 -4.3 737,740 + SMa1347 0.61 -3.6 737,773 + SMa1347 0.65 -0.4 737,925 - SMa1347 0.80 -2.2 737,943 - SMa1347 0.82 +1.2 738,071 - -0.6 738,071 - +2.0 738,146 - -3.2 738,263 - SMa1349 0.17 +1.1 738,266 + SMa1349 0.18 +0.2 738,266 + SMa1349 0.18 -3.5 738,272 + SMa1349 0.18 +1.9 738,273 - SMa1349 0.19 +1.3 738,273 - SMa1349 0.19 +1.0 738,273 - SMa1349 0.19 -1.8 738,316 + SMa1349 0.25 -4.1 738,316 + SMa1349 0.25 +0.3 738,321 - SMa1349 0.26 +1.1 738,346 + SMa1349 0.29 +0.4 738,347 - SMa1349 0.29 +1.2 738,347 - SMa1349 0.29 +0.5 738,349 + SMa1349 0.30 +1.2 738,451 + SMa1349 0.44 +0.5 738,491 - SMa1349 0.50 -1.6 738,491 - SMa1349 0.50 +0.5 738,491 - SMa1349 0.50 +0.1 738,569 - SMa1349 0.61 -1.8 738,650 - SMa1349 0.73 -0.5 738,650 - SMa1349 0.73 -0.3 738,654 - SMa1349 0.74 -0.5 738,795 + +1.6 738,795 + +0.8 738,796 - -1.7 738,837 - +1.5 738,840 + +0.7 738,879 - +2.9 738,914 + -2.0 738,915 - -0.5 739,121 - SMa1351 0.23 -0.1 739,267 + SMa1351 0.35 +0.8 739,267 + SMa1351 0.35 +0.5 739,268 - SMa1351 0.35 -0.1 739,379 - SMa1351 0.45 -1.0 739,434 + SMa1351 0.49 -0.2 739,434 + SMa1351 0.49 +0.0 739,498 - SMa1351 0.55 -0.9 739,551 + SMa1351 0.59 +1.5 739,551 + SMa1351 0.59 -1.6 739,551 + SMa1351 0.59 +0.5 739,551 + SMa1351 0.59 +0.6 739,573 + SMa1351 0.61 +0.5 739,574 - SMa1351 0.61 +1.1 739,654 + SMa1351 0.67 -0.5 739,693 + SMa1351 0.71 -2.4 739,737 + SMa1351 0.74 -0.8 739,738 - SMa1351 0.74 +1.2 739,762 + SMa1351 0.76 +1.6 739,803 + SMa1351 0.80 -3.1 739,831 - SMa1351 0.82 +0.4
Or see this region's nucleotide sequence