Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1087 and SMa1089 overlap by 4 nucleotides SMa1089 and SMa1091 overlap by 4 nucleotides SMa1091 and SMa1092 are separated by 223 nucleotides SMa1092 and SMa1093 are separated by 253 nucleotides
SMa1087: SMa1087 - cation transport P-type ATPase, at 594,396 to 596,597
SMa1087
SMa1089: SMa1089 - hypothetical protein, at 596,594 to 596,797
SMa1089
SMa1091: SMa1091 - hypothetical protein, at 596,794 to 597,297
SMa1091
SMa1092: SMa1092 - hypothetical protein, at 597,521 to 598,030
SMa1092
SMa1093: SMa1093 - hypothetical protein, at 598,284 to 598,616
SMa1093
Position (kb) 596
597
598 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 595.943 kb on - strand, within SMa1087 at 596.008 kb on + strand, within SMa1087 at 596.009 kb on - strand, within SMa1087 at 596.051 kb on - strand, within SMa1087 at 596.326 kb on + strand, within SMa1087 at 596.396 kb on + strand at 596.594 kb on - strand at 596.594 kb on - strand at 596.789 kb on - strand at 596.801 kb on - strand at 596.861 kb on - strand, within SMa1091 at 596.935 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.996 kb on + strand, within SMa1091 at 596.997 kb on - strand, within SMa1091 at 596.997 kb on - strand, within SMa1091 at 597.059 kb on + strand, within SMa1091 at 597.169 kb on + strand, within SMa1091 at 597.227 kb on - strand, within SMa1091 at 597.295 kb on + strand at 597.295 kb on + strand at 597.421 kb on + strand at 597.422 kb on - strand at 597.422 kb on - strand at 597.445 kb on - strand at 597.522 kb on + strand at 597.523 kb on - strand at 597.523 kb on - strand at 597.523 kb on - strand at 597.523 kb on - strand at 597.577 kb on + strand, within SMa1092 at 597.654 kb on + strand, within SMa1092 at 597.954 kb on - strand at 597.989 kb on - strand at 597.989 kb on - strand at 597.989 kb on - strand at 598.064 kb on + strand at 598.065 kb on - strand at 598.065 kb on - strand at 598.126 kb on - strand at 598.270 kb on + strand at 598.270 kb on + strand at 598.271 kb on - strand at 598.271 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 595,943 - SMa1087 0.70 -2.2 596,008 + SMa1087 0.73 +0.1 596,009 - SMa1087 0.73 -0.9 596,051 - SMa1087 0.75 -2.5 596,326 + SMa1087 0.88 +0.7 596,396 + -1.5 596,594 - -0.3 596,594 - +1.1 596,789 - +1.0 596,801 - +0.0 596,861 - SMa1091 0.13 -1.8 596,935 + SMa1091 0.28 -2.5 596,996 + SMa1091 0.40 -1.9 596,996 + SMa1091 0.40 -2.4 596,996 + SMa1091 0.40 -0.4 596,996 + SMa1091 0.40 +2.4 596,997 - SMa1091 0.40 -1.1 596,997 - SMa1091 0.40 -2.4 597,059 + SMa1091 0.53 -0.3 597,169 + SMa1091 0.74 -0.1 597,227 - SMa1091 0.86 -2.4 597,295 + -1.9 597,295 + +0.2 597,421 + -2.4 597,422 - -0.4 597,422 - -0.6 597,445 - -0.2 597,522 + +0.9 597,523 - +1.1 597,523 - -2.1 597,523 - -5.3 597,523 - -0.1 597,577 + SMa1092 0.11 -0.8 597,654 + SMa1092 0.26 -0.5 597,954 - +0.8 597,989 - +1.6 597,989 - -3.0 597,989 - +1.2 598,064 + +0.1 598,065 - -3.6 598,065 - -0.1 598,126 - -0.9 598,270 + +0.7 598,270 + -0.6 598,271 - +0.3 598,271 - +0.1
Or see this region's nucleotide sequence