Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1060 and SMa1062 overlap by 4 nucleotides SMa1062 and SMa1063 overlap by 65 nucleotides SMa1063 and SMa1065 are separated by 51 nucleotides
SMa1060: SMa1060 - hypothetical protein, at 579,986 to 581,353
SMa1060
SMa1062: SMa1062 - hypothetical protein, at 581,350 to 582,180
SMa1062
SMa1063: SMa1063 - hypothetical protein, at 582,116 to 582,367
SMa1063
SMa1065: SMa1065 - hypothetical protein, at 582,419 to 583,207
SMa1065
Position (kb) 581
582
583 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 580.356 kb on + strand, within SMa1060 at 580.365 kb on + strand, within SMa1060 at 580.365 kb on + strand, within SMa1060 at 580.366 kb on - strand, within SMa1060 at 580.366 kb on - strand, within SMa1060 at 580.366 kb on - strand, within SMa1060 at 580.387 kb on + strand, within SMa1060 at 580.387 kb on + strand, within SMa1060 at 580.387 kb on + strand, within SMa1060 at 580.635 kb on + strand, within SMa1060 at 580.677 kb on + strand, within SMa1060 at 580.756 kb on - strand, within SMa1060 at 580.780 kb on - strand, within SMa1060 at 580.882 kb on + strand, within SMa1060 at 580.883 kb on - strand, within SMa1060 at 580.979 kb on - strand, within SMa1060 at 580.987 kb on - strand, within SMa1060 at 580.988 kb on + strand, within SMa1060 at 581.010 kb on + strand, within SMa1060 at 581.010 kb on + strand, within SMa1060 at 581.011 kb on - strand, within SMa1060 at 581.045 kb on + strand, within SMa1060 at 581.175 kb on + strand, within SMa1060 at 581.176 kb on - strand, within SMa1060 at 581.208 kb on + strand, within SMa1060 at 581.208 kb on + strand, within SMa1060 at 581.209 kb on - strand, within SMa1060 at 581.220 kb on + strand at 581.244 kb on + strand at 581.244 kb on + strand at 581.244 kb on + strand at 581.244 kb on + strand at 581.249 kb on - strand at 581.251 kb on - strand at 581.251 kb on - strand at 581.356 kb on + strand at 581.356 kb on + strand at 581.414 kb on + strand at 581.429 kb on + strand at 581.429 kb on + strand at 581.429 kb on + strand at 581.560 kb on - strand, within SMa1062 at 581.586 kb on - strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.639 kb on + strand, within SMa1062 at 581.640 kb on - strand, within SMa1062 at 581.681 kb on + strand, within SMa1062 at 581.827 kb on - strand, within SMa1062 at 581.984 kb on - strand, within SMa1062 at 581.984 kb on - strand, within SMa1062 at 582.005 kb on + strand, within SMa1062 at 582.024 kb on - strand, within SMa1062 at 582.039 kb on - strand, within SMa1062 at 582.140 kb on + strand at 582.200 kb on - strand, within SMa1063 at 582.280 kb on + strand, within SMa1063 at 582.281 kb on - strand, within SMa1063 at 582.393 kb on - strand at 582.420 kb on + strand at 582.420 kb on + strand at 582.490 kb on - strand at 582.618 kb on + strand, within SMa1065 at 582.618 kb on + strand, within SMa1065 at 582.619 kb on - strand, within SMa1065 at 582.619 kb on - strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.900 kb on + strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 582.901 kb on - strand, within SMa1065 at 583.175 kb on + strand at 583.175 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 580,356 + SMa1060 0.27 +1.2 580,365 + SMa1060 0.28 +0.9 580,365 + SMa1060 0.28 -0.6 580,366 - SMa1060 0.28 -0.2 580,366 - SMa1060 0.28 +0.8 580,366 - SMa1060 0.28 -0.6 580,387 + SMa1060 0.29 -0.1 580,387 + SMa1060 0.29 -1.1 580,387 + SMa1060 0.29 -2.6 580,635 + SMa1060 0.47 +1.1 580,677 + SMa1060 0.51 -0.5 580,756 - SMa1060 0.56 -0.6 580,780 - SMa1060 0.58 -0.1 580,882 + SMa1060 0.65 +0.4 580,883 - SMa1060 0.66 +0.3 580,979 - SMa1060 0.73 -0.1 580,987 - SMa1060 0.73 -0.2 580,988 + SMa1060 0.73 -0.8 581,010 + SMa1060 0.75 -0.8 581,010 + SMa1060 0.75 -1.1 581,011 - SMa1060 0.75 -2.2 581,045 + SMa1060 0.77 +0.8 581,175 + SMa1060 0.87 -0.1 581,176 - SMa1060 0.87 +1.4 581,208 + SMa1060 0.89 +0.7 581,208 + SMa1060 0.89 -0.2 581,209 - SMa1060 0.89 +1.8 581,220 + -1.6 581,244 + -1.1 581,244 + +0.2 581,244 + -0.8 581,244 + +0.7 581,249 - +0.3 581,251 - -0.7 581,251 - -0.7 581,356 + -0.1 581,356 + +1.9 581,414 + -1.1 581,429 + +1.4 581,429 + -1.0 581,429 + -1.2 581,560 - SMa1062 0.25 -0.3 581,586 - SMa1062 0.28 -4.1 581,639 + SMa1062 0.35 -1.9 581,639 + SMa1062 0.35 -3.1 581,639 + SMa1062 0.35 +0.8 581,640 - SMa1062 0.35 -3.2 581,681 + SMa1062 0.40 +0.1 581,827 - SMa1062 0.57 -0.4 581,984 - SMa1062 0.76 +0.0 581,984 - SMa1062 0.76 -1.0 582,005 + SMa1062 0.79 -1.8 582,024 - SMa1062 0.81 +0.3 582,039 - SMa1062 0.83 -1.1 582,140 + +0.2 582,200 - SMa1063 0.33 -1.6 582,280 + SMa1063 0.65 +1.6 582,281 - SMa1063 0.65 -0.7 582,393 - -3.9 582,420 + +0.3 582,420 + +0.3 582,490 - -2.9 582,618 + SMa1065 0.25 -0.1 582,618 + SMa1065 0.25 -1.4 582,619 - SMa1065 0.25 +1.4 582,619 - SMa1065 0.25 -0.4 582,900 + SMa1065 0.61 -0.0 582,900 + SMa1065 0.61 -1.7 582,900 + SMa1065 0.61 -2.8 582,900 + SMa1065 0.61 -2.4 582,901 - SMa1065 0.61 -0.7 582,901 - SMa1065 0.61 +0.9 582,901 - SMa1065 0.61 -0.1 582,901 - SMa1065 0.61 -0.4 582,901 - SMa1065 0.61 +0.3 582,901 - SMa1065 0.61 -0.9 583,175 + +0.9 583,175 + +0.1
Or see this region's nucleotide sequence