Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa1037 and SMa1038 are separated by 14 nucleotides SMa1038 and SMa1041 are separated by 6 nucleotides SMa1041 and SMa1043 are separated by 19 nucleotides SMa1043 and SMa1045 are separated by 92 nucleotides
SMa1037: SMa1037 - hypothetical protein, at 570,509 to 571,975
SMa1037
SMa1038: SMa1038 - copper-containing oxidase, at 571,990 to 573,339
SMa1038
SMa1041: SMa1041 - copper oxidase, at 573,346 to 573,858
SMa1041
SMa1043: SMa1043 - hypothetical protein, at 573,878 to 574,162
SMa1043
SMa1045: SMa1045 - hypothetical protein, at 574,255 to 574,542
SMa1045
Position (kb) 571
572
573
574 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 571.451 kb on + strand at 571.452 kb on - strand, within SMa1037 at 571.474 kb on + strand, within SMa1037 at 571.607 kb on + strand, within SMa1037 at 571.607 kb on + strand, within SMa1037 at 571.609 kb on + strand, within SMa1037 at 571.610 kb on - strand, within SMa1037 at 571.610 kb on - strand, within SMa1037 at 571.610 kb on - strand, within SMa1037 at 571.770 kb on - strand, within SMa1037 at 572.064 kb on + strand at 572.119 kb on - strand at 572.141 kb on - strand at 572.142 kb on + strand, within SMa1038 at 572.143 kb on - strand, within SMa1038 at 572.491 kb on + strand, within SMa1038 at 572.491 kb on + strand, within SMa1038 at 572.491 kb on + strand, within SMa1038 at 572.492 kb on - strand, within SMa1038 at 572.614 kb on + strand, within SMa1038 at 572.614 kb on + strand, within SMa1038 at 572.614 kb on + strand, within SMa1038 at 572.615 kb on - strand, within SMa1038 at 572.615 kb on - strand, within SMa1038 at 572.635 kb on + strand, within SMa1038 at 572.635 kb on + strand, within SMa1038 at 572.635 kb on + strand, within SMa1038 at 572.636 kb on - strand, within SMa1038 at 572.636 kb on - strand, within SMa1038 at 572.670 kb on + strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.671 kb on - strand, within SMa1038 at 572.685 kb on + strand, within SMa1038 at 572.686 kb on - strand, within SMa1038 at 572.815 kb on - strand, within SMa1038 at 573.043 kb on + strand, within SMa1038 at 573.044 kb on - strand, within SMa1038 at 573.324 kb on + strand at 573.324 kb on + strand at 573.324 kb on + strand at 573.324 kb on + strand at 573.324 kb on + strand at 573.325 kb on - strand at 573.325 kb on - strand at 573.325 kb on - strand at 573.366 kb on + strand at 573.366 kb on + strand at 573.366 kb on + strand at 573.366 kb on + strand at 573.367 kb on - strand at 573.367 kb on - strand at 573.389 kb on + strand at 573.389 kb on + strand at 573.389 kb on + strand at 574.141 kb on + strand at 574.141 kb on + strand at 574.142 kb on - strand at 574.160 kb on + strand at 574.160 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 571,451 + +3.3 571,452 - SMa1037 0.64 -0.8 571,474 + SMa1037 0.66 +0.6 571,607 + SMa1037 0.75 +0.4 571,607 + SMa1037 0.75 -1.2 571,609 + SMa1037 0.75 -4.2 571,610 - SMa1037 0.75 -1.4 571,610 - SMa1037 0.75 +0.2 571,610 - SMa1037 0.75 -0.2 571,770 - SMa1037 0.86 +0.2 572,064 + +0.1 572,119 - -0.3 572,141 - +0.9 572,142 + SMa1038 0.11 -2.1 572,143 - SMa1038 0.11 +1.9 572,491 + SMa1038 0.37 -0.2 572,491 + SMa1038 0.37 -0.5 572,491 + SMa1038 0.37 +1.8 572,492 - SMa1038 0.37 -3.4 572,614 + SMa1038 0.46 +0.7 572,614 + SMa1038 0.46 -0.6 572,614 + SMa1038 0.46 -0.3 572,615 - SMa1038 0.46 -3.1 572,615 - SMa1038 0.46 -1.2 572,635 + SMa1038 0.48 +0.9 572,635 + SMa1038 0.48 -3.5 572,635 + SMa1038 0.48 +1.6 572,636 - SMa1038 0.48 +0.1 572,636 - SMa1038 0.48 +0.6 572,670 + SMa1038 0.50 +0.7 572,671 - SMa1038 0.50 +0.1 572,671 - SMa1038 0.50 +0.5 572,671 - SMa1038 0.50 -0.2 572,671 - SMa1038 0.50 -0.4 572,685 + SMa1038 0.51 -2.3 572,686 - SMa1038 0.52 -4.2 572,815 - SMa1038 0.61 -1.6 573,043 + SMa1038 0.78 -0.7 573,044 - SMa1038 0.78 +0.9 573,324 + +0.5 573,324 + -0.5 573,324 + -2.1 573,324 + +0.9 573,324 + -2.0 573,325 - -0.6 573,325 - +0.2 573,325 - +0.8 573,366 + -1.2 573,366 + -1.9 573,366 + -1.4 573,366 + -0.1 573,367 - -3.3 573,367 - -2.2 573,389 + -0.8 573,389 + -1.4 573,389 + -2.6 574,141 + -0.5 574,141 + -2.3 574,142 - +0.1 574,160 + -3.5 574,160 + +0.2
Or see this region's nucleotide sequence