Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0882 and SMa0883 are separated by 24 nucleotides SMa0883 and SMa0886 are separated by 132 nucleotides SMa0886 and SMa5005 overlap by 397 nucleotides SMa5005 and SMa0887 overlap by 135 nucleotides SMa0887 and SMa0888 are separated by 61 nucleotides
SMa0882: SMa0882 - hypothetical protein, at 492,523 to 493,113
SMa0882
SMa0883: SMa0883 - hypothetical protein, at 493,138 to 493,668
SMa0883
SMa0886: SMa0886 - hypothetical protein, at 493,801 to 494,535
SMa0886
SMa5005: SMa5005 - hypothetical protein, at 494,139 to 494,702
SMa5005
SMa0887: SMa0887 - hypothetical protein, at 494,568 to 495,134
SMa0887
SMa0888: SMa0888 - hypothetical protein, at 495,196 to 496,014
SMa0888
Position (kb) 493
494
495 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 492.819 kb on - strand, within SMa0882 at 492.882 kb on + strand, within SMa0882 at 493.171 kb on - strand at 493.171 kb on - strand at 493.229 kb on + strand, within SMa0883 at 493.230 kb on - strand, within SMa0883 at 493.230 kb on - strand, within SMa0883 at 493.421 kb on - strand, within SMa0883 at 493.468 kb on + strand, within SMa0883 at 493.862 kb on + strand at 494.063 kb on + strand, within SMa0886 at 494.064 kb on - strand, within SMa0886 at 494.300 kb on + strand at 494.300 kb on + strand at 494.301 kb on - strand at 494.301 kb on - strand at 494.376 kb on + strand at 494.494 kb on + strand at 494.495 kb on - strand at 494.495 kb on - strand at 494.832 kb on + strand, within SMa0887 at 494.832 kb on + strand, within SMa0887 at 494.832 kb on + strand, within SMa0887 at 494.833 kb on - strand, within SMa0887 at 495.152 kb on - strand at 495.152 kb on - strand at 495.293 kb on + strand, within SMa0888 at 495.436 kb on - strand, within SMa0888
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 492,819 - SMa0882 0.50 +0.9 492,882 + SMa0882 0.61 +1.5 493,171 - +0.1 493,171 - +0.6 493,229 + SMa0883 0.17 +2.4 493,230 - SMa0883 0.17 +1.2 493,230 - SMa0883 0.17 -0.1 493,421 - SMa0883 0.53 -0.7 493,468 + SMa0883 0.62 -0.5 493,862 + +2.2 494,063 + SMa0886 0.36 +0.7 494,064 - SMa0886 0.36 +1.0 494,300 + -1.0 494,300 + +0.6 494,301 - -0.6 494,301 - -2.8 494,376 + -1.7 494,494 + -0.2 494,495 - -1.0 494,495 - +1.1 494,832 + SMa0887 0.47 -1.9 494,832 + SMa0887 0.47 +0.6 494,832 + SMa0887 0.47 -3.0 494,833 - SMa0887 0.47 -0.2 495,152 - +1.5 495,152 - -0.5 495,293 + SMa0888 0.12 +0.0 495,436 - SMa0888 0.29 +1.4
Or see this region's nucleotide sequence