Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0796 and SMa0797 are separated by 5 nucleotides SMa0797 and SMa0799 are separated by 37 nucleotides
SMa0796: SMa0796 - hypothetical protein, at 434,028 to 435,491
SMa0796
SMa0797: SMa0797 - hypothetical protein, at 435,497 to 435,823
SMa0797
SMa0799: SMa0799 - ABC transporter substrate-binding protein, at 435,861 to 436,871
SMa0799
Position (kb) 435
436 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2
3 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.693 kb on - strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.726 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.728 kb on + strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.729 kb on - strand, within SMa0796 at 434.731 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.105 kb on + strand, within SMa0796 at 435.329 kb on + strand, within SMa0796 at 435.330 kb on - strand, within SMa0796 at 435.330 kb on - strand, within SMa0796 at 435.333 kb on + strand, within SMa0796 at 435.334 kb on - strand, within SMa0796 at 435.420 kb on + strand at 435.519 kb on - strand at 435.519 kb on - strand at 435.545 kb on - strand, within SMa0797 at 435.655 kb on + strand, within SMa0797 at 435.656 kb on - strand, within SMa0797 at 435.665 kb on + strand, within SMa0797 at 435.772 kb on + strand, within SMa0797 at 435.822 kb on - strand at 435.866 kb on + strand at 435.866 kb on + strand at 435.872 kb on - strand at 435.872 kb on - strand at 435.905 kb on + strand at 435.905 kb on + strand at 435.905 kb on + strand at 435.906 kb on - strand at 435.906 kb on - strand at 435.906 kb on - strand at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.062 kb on - strand, within SMa0799 at 436.207 kb on - strand, within SMa0799 at 436.225 kb on - strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.227 kb on + strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.228 kb on - strand, within SMa0799 at 436.329 kb on + strand, within SMa0799 at 436.330 kb on - strand, within SMa0799 at 436.381 kb on + strand, within SMa0799 at 436.443 kb on - strand, within SMa0799 at 436.517 kb on + strand, within SMa0799 at 436.657 kb on + strand, within SMa0799
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 434,693 - SMa0796 0.45 +0.9 434,693 - SMa0796 0.45 -1.2 434,693 - SMa0796 0.45 -0.0 434,726 + SMa0796 0.48 -1.2 434,726 + SMa0796 0.48 +0.1 434,728 + SMa0796 0.48 -0.6 434,728 + SMa0796 0.48 -3.9 434,728 + SMa0796 0.48 -2.5 434,728 + SMa0796 0.48 +1.8 434,728 + +2.5 434,728 + SMa0796 0.48 +0.7 434,728 + SMa0796 0.48 +2.9 434,728 + SMa0796 0.48 +0.4 434,729 - SMa0796 0.48 -0.1 434,729 - SMa0796 0.48 -3.1 434,731 + SMa0796 0.48 -0.1 435,105 + SMa0796 0.74 +0.8 435,105 + SMa0796 0.74 +0.6 435,105 + SMa0796 0.74 -2.5 435,329 + SMa0796 0.89 -0.5 435,330 - SMa0796 0.89 +0.5 435,330 - SMa0796 0.89 +0.2 435,333 + SMa0796 0.89 +0.7 435,334 - SMa0796 0.89 -0.2 435,420 + +0.3 435,519 - -1.9 435,519 - +1.6 435,545 - SMa0797 0.15 +1.3 435,655 + SMa0797 0.48 -4.8 435,656 - SMa0797 0.49 +0.9 435,665 + SMa0797 0.51 +1.3 435,772 + SMa0797 0.84 +1.0 435,822 - -0.0 435,866 + +0.8 435,866 + +1.1 435,872 - +3.4 435,872 - -1.9 435,905 + +0.9 435,905 + -4.3 435,905 + -1.6 435,906 - +0.1 435,906 - +0.2 435,906 - -1.1 436,062 - SMa0799 0.20 +0.4 436,062 - SMa0799 0.20 -0.5 436,062 - SMa0799 0.20 -0.8 436,062 - SMa0799 0.20 -0.2 436,207 - SMa0799 0.34 -0.7 436,225 - SMa0799 0.36 +0.7 436,227 + SMa0799 0.36 -0.5 436,227 + SMa0799 0.36 -0.1 436,227 + SMa0799 0.36 +1.4 436,228 - SMa0799 0.36 -0.2 436,228 - SMa0799 0.36 -0.8 436,329 + SMa0799 0.46 -0.2 436,330 - SMa0799 0.46 -0.3 436,381 + SMa0799 0.51 +1.8 436,443 - SMa0799 0.58 -0.2 436,517 + SMa0799 0.65 +0.3 436,657 + SMa0799 0.79 +0.2
Or see this region's nucleotide sequence