Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0750 and SMa0751 are separated by 147 nucleotides SMa0751 and SMa0752 are separated by 4 nucleotides
SMa0750: SMa0750 - LysR family transcriptional regulator, at 403,178 to 404,056
SMa0750
SMa0751: SMa0751 - Ring-hydroxylating dioxygenase, at 404,204 to 405,442
SMa0751
SMa0752: SMa0752 - dioxygenase reductase subunit, at 405,447 to 406,508
SMa0752
Position (kb) 404
405
406 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 403.383 kb on + strand, within SMa0750 at 403.383 kb on + strand, within SMa0750 at 403.384 kb on - strand, within SMa0750 at 403.384 kb on - strand, within SMa0750 at 403.395 kb on + strand, within SMa0750 at 403.395 kb on + strand, within SMa0750 at 403.587 kb on + strand, within SMa0750 at 403.730 kb on + strand, within SMa0750 at 403.730 kb on + strand, within SMa0750 at 404.070 kb on + strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.071 kb on - strand at 404.092 kb on + strand at 404.165 kb on + strand at 404.279 kb on + strand at 404.279 kb on + strand at 404.280 kb on - strand at 404.280 kb on - strand at 404.282 kb on - strand at 404.298 kb on - strand at 404.324 kb on + strand at 404.325 kb on - strand at 404.325 kb on - strand at 404.339 kb on + strand, within SMa0751 at 404.340 kb on - strand, within SMa0751 at 404.374 kb on + strand, within SMa0751 at 404.378 kb on + strand, within SMa0751 at 404.379 kb on - strand, within SMa0751 at 404.379 kb on - strand, within SMa0751 at 404.388 kb on + strand, within SMa0751 at 404.389 kb on - strand, within SMa0751 at 404.402 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.540 kb on + strand, within SMa0751 at 404.648 kb on + strand, within SMa0751 at 404.648 kb on + strand, within SMa0751 at 404.649 kb on - strand, within SMa0751 at 404.649 kb on - strand, within SMa0751 at 404.650 kb on + strand, within SMa0751 at 404.651 kb on - strand, within SMa0751 at 404.708 kb on + strand, within SMa0751 at 404.755 kb on + strand, within SMa0751 at 404.810 kb on + strand, within SMa0751 at 404.899 kb on + strand, within SMa0751 at 404.899 kb on + strand, within SMa0751 at 404.900 kb on - strand, within SMa0751 at 404.900 kb on - strand, within SMa0751 at 404.992 kb on + strand, within SMa0751 at 405.021 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.023 kb on - strand, within SMa0751 at 405.105 kb on - strand, within SMa0751 at 405.158 kb on - strand, within SMa0751 at 405.205 kb on - strand, within SMa0751 at 405.234 kb on - strand, within SMa0751 at 405.389 kb on + strand at 405.390 kb on - strand at 405.636 kb on + strand, within SMa0752 at 405.636 kb on + strand, within SMa0752 at 405.636 kb on + strand, within SMa0752 at 405.637 kb on - strand, within SMa0752 at 405.637 kb on - strand, within SMa0752 at 405.637 kb on - strand, within SMa0752 at 405.638 kb on + strand, within SMa0752 at 405.733 kb on + strand, within SMa0752 at 405.733 kb on + strand, within SMa0752 at 405.734 kb on - strand, within SMa0752 at 405.734 kb on - strand, within SMa0752 at 405.737 kb on + strand, within SMa0752 at 405.737 kb on + strand, within SMa0752 at 405.737 kb on + strand, within SMa0752 at 405.738 kb on - strand, within SMa0752 at 406.077 kb on + strand, within SMa0752 at 406.118 kb on + strand, within SMa0752 at 406.118 kb on + strand, within SMa0752 at 406.119 kb on - strand, within SMa0752 at 406.309 kb on + strand, within SMa0752 at 406.379 kb on + strand, within SMa0752 at 406.379 kb on + strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.380 kb on - strand, within SMa0752 at 406.409 kb on + strand at 406.410 kb on - strand at 406.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 403,383 + SMa0750 0.23 -1.4 403,383 + SMa0750 0.23 -0.6 403,384 - SMa0750 0.23 +0.2 403,384 - SMa0750 0.23 -2.3 403,395 + SMa0750 0.25 -0.1 403,395 + SMa0750 0.25 +0.4 403,587 + SMa0750 0.47 +2.1 403,730 + SMa0750 0.63 -0.9 403,730 + SMa0750 0.63 -0.6 404,070 + +0.5 404,071 - -3.8 404,071 - -0.3 404,071 - -0.5 404,071 - +0.2 404,092 + -0.6 404,165 + -1.4 404,279 + +1.5 404,279 + -0.9 404,280 - -0.5 404,280 - -2.9 404,282 - -3.2 404,298 - -0.1 404,324 + +3.9 404,325 - +0.2 404,325 - -0.6 404,339 + SMa0751 0.11 -0.2 404,340 - SMa0751 0.11 -0.4 404,374 + SMa0751 0.14 -3.5 404,378 + SMa0751 0.14 -0.9 404,379 - SMa0751 0.14 +0.3 404,379 - SMa0751 0.14 +1.5 404,388 + SMa0751 0.15 -1.0 404,389 - SMa0751 0.15 -1.1 404,402 + SMa0751 0.16 -1.0 404,540 + SMa0751 0.27 +0.1 404,540 + SMa0751 0.27 +0.5 404,540 + SMa0751 0.27 -0.9 404,648 + SMa0751 0.36 +1.0 404,648 + SMa0751 0.36 +0.8 404,649 - SMa0751 0.36 +0.9 404,649 - SMa0751 0.36 +0.9 404,650 + SMa0751 0.36 -0.9 404,651 - SMa0751 0.36 +1.2 404,708 + SMa0751 0.41 +0.4 404,755 + SMa0751 0.44 +0.5 404,810 + SMa0751 0.49 +1.2 404,899 + SMa0751 0.56 +0.2 404,899 + SMa0751 0.56 -0.3 404,900 - SMa0751 0.56 -1.1 404,900 - SMa0751 0.56 -1.1 404,992 + SMa0751 0.64 +1.1 405,021 - SMa0751 0.66 -0.1 405,023 - SMa0751 0.66 +0.6 405,023 - SMa0751 0.66 -0.8 405,023 - SMa0751 0.66 +0.5 405,105 - SMa0751 0.73 -0.1 405,158 - SMa0751 0.77 -0.2 405,205 - SMa0751 0.81 -0.1 405,234 - SMa0751 0.83 +2.2 405,389 + +1.1 405,390 - +1.5 405,636 + SMa0752 0.18 -0.3 405,636 + SMa0752 0.18 -0.6 405,636 + SMa0752 0.18 +1.1 405,637 - SMa0752 0.18 -0.5 405,637 - SMa0752 0.18 -1.6 405,637 - SMa0752 0.18 -0.5 405,638 + SMa0752 0.18 +0.3 405,733 + SMa0752 0.27 -1.0 405,733 + SMa0752 0.27 -0.8 405,734 - SMa0752 0.27 -0.7 405,734 - SMa0752 0.27 +1.4 405,737 + SMa0752 0.27 +0.1 405,737 + SMa0752 0.27 -0.7 405,737 + SMa0752 0.27 -0.8 405,738 - SMa0752 0.27 -1.1 406,077 + SMa0752 0.59 +0.2 406,118 + SMa0752 0.63 -1.0 406,118 + SMa0752 0.63 -2.5 406,119 - SMa0752 0.63 -0.2 406,309 + SMa0752 0.81 -3.3 406,379 + SMa0752 0.88 -0.3 406,379 + SMa0752 0.88 +0.6 406,380 - SMa0752 0.88 -0.5 406,380 - SMa0752 0.88 -2.6 406,380 - SMa0752 0.88 +1.5 406,409 + -1.1 406,410 - -0.3 406,410 - +1.2
Or see this region's nucleotide sequence