Experiment: copper (II) chloride 1 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt SMa0728 and SMa0731 are separated by 340 nucleotides SMa0731 and SMa0734 are separated by 195 nucleotides SMa0734 and SMa0736 are separated by 14 nucleotides SMa0736 and SMa0738 are separated by 264 nucleotides SMa0738 and SMa0739 are separated by 100 nucleotides
SMa0728: SMa0728 - hypothetical protein, at 394,691 to 394,891
SMa0728
SMa0731: SMa0731 - hypothetical protein, at 395,232 to 395,579
SMa0731
SMa0734: SMa0734 - hypothetical protein, at 395,775 to 396,098
SMa0734
SMa0736: SMa0736 - hypothetical protein, at 396,113 to 396,385
SMa0736
SMa0738: SMa0738 - CspA6 cold shock protein transcriptional regulator, at 396,650 to 396,853
SMa0738
SMa0739: SMa0739 - hypothetical protein, at 396,954 to 397,382
SMa0739
Position (kb) 395
396
397 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 394.796 kb on - strand, within SMa0728 at 394.796 kb on - strand, within SMa0728 at 394.863 kb on + strand, within SMa0728 at 394.889 kb on + strand at 394.905 kb on + strand at 394.906 kb on - strand at 394.986 kb on + strand at 395.030 kb on + strand at 395.034 kb on + strand at 395.035 kb on - strand at 395.057 kb on - strand at 395.057 kb on - strand at 395.117 kb on + strand at 395.117 kb on + strand at 395.118 kb on - strand at 395.118 kb on - strand at 395.118 kb on - strand at 395.268 kb on + strand, within SMa0731 at 395.268 kb on + strand, within SMa0731 at 395.268 kb on + strand, within SMa0731 at 395.269 kb on - strand, within SMa0731 at 395.500 kb on - strand, within SMa0731 at 395.629 kb on + strand at 395.638 kb on - strand at 395.644 kb on + strand at 395.645 kb on - strand at 395.886 kb on + strand, within SMa0734 at 395.886 kb on + strand, within SMa0734 at 396.058 kb on + strand, within SMa0734 at 396.138 kb on + strand at 396.138 kb on + strand at 396.139 kb on - strand at 396.139 kb on - strand at 396.139 kb on - strand at 396.139 kb on - strand at 396.212 kb on + strand, within SMa0736 at 396.245 kb on + strand, within SMa0736 at 396.246 kb on - strand, within SMa0736 at 396.302 kb on - strand, within SMa0736 at 396.473 kb on + strand at 396.474 kb on - strand at 396.511 kb on + strand at 396.539 kb on - strand at 396.592 kb on - strand at 396.711 kb on + strand, within SMa0738 at 396.711 kb on + strand, within SMa0738 at 396.712 kb on - strand, within SMa0738 at 396.712 kb on - strand, within SMa0738 at 396.773 kb on + strand, within SMa0738 at 396.836 kb on + strand at 396.837 kb on - strand at 396.837 kb on - strand at 396.960 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction copper (II) chloride 1 mM remove 394,796 - SMa0728 0.52 -3.4 394,796 - SMa0728 0.52 -3.0 394,863 + SMa0728 0.86 +0.2 394,889 + +0.8 394,905 + +0.1 394,906 - -0.3 394,986 + +1.1 395,030 + -1.4 395,034 + +1.1 395,035 - +1.2 395,057 - +0.2 395,057 - -2.4 395,117 + -1.9 395,117 + -0.6 395,118 - -0.4 395,118 - +0.9 395,118 - -2.1 395,268 + SMa0731 0.10 +0.4 395,268 + SMa0731 0.10 +1.6 395,268 + SMa0731 0.10 +0.6 395,269 - SMa0731 0.11 +0.2 395,500 - SMa0731 0.77 +0.3 395,629 + -0.1 395,638 - +1.4 395,644 + +2.6 395,645 - -4.1 395,886 + SMa0734 0.34 +2.7 395,886 + SMa0734 0.34 +0.9 396,058 + SMa0734 0.87 -1.0 396,138 + +0.6 396,138 + +1.8 396,139 - +0.1 396,139 - -0.5 396,139 - +0.4 396,139 - +0.6 396,212 + SMa0736 0.36 +0.9 396,245 + SMa0736 0.48 +1.1 396,246 - SMa0736 0.49 -1.9 396,302 - SMa0736 0.69 +0.6 396,473 + -1.9 396,474 - -0.8 396,511 + +0.2 396,539 - -1.1 396,592 - -0.7 396,711 + SMa0738 0.30 -1.1 396,711 + SMa0738 0.30 +0.0 396,712 - SMa0738 0.30 -0.3 396,712 - SMa0738 0.30 -1.2 396,773 + SMa0738 0.60 +1.6 396,836 + -2.5 396,837 - -0.4 396,837 - -0.6 396,960 - -0.6
Or see this region's nucleotide sequence